Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g2075 ATGGAGAGCACCGAAGACTCATCCACGAGTTCACAACAACAACAACAACCGAACCTGCCACCCGGGTTTCGGTTCCACCCCACGGACGAGGAGCTCGTGGTTCATTACCTCAAGAAGAAAGTTGATTCTGTTCCTCTCCCTGTTTCAATCATCGCTGATGTTGATCTCTACAAGTTTGATCCATGGGAATTACCAGCTATGGCATCGTTTGGGGCGGAAGAGTGGTACTTTTTCAGCCCGAGAGAAAGGAAGTACCCGAATGGCGCAAGGCCAAACAGGGCTGCAACTTCAGGGTATTGGAAGGCCACAGGTACAGATAAGCCTATATGTAGTGGAACTCAAAAGGTTGGGGTGAAGAAATCTTTGGTTTTCTATGGAGGGAAGCCACCAAAAGGGGTCAAAACTGATTGGATCATGCATGAGTACCGTGTTGCTGAAAACAAGCCTAACAATAGGCCTCCTGGGTGTGACTTGGGCCACAAGAAAAACTCCCTAAGGCTGGATGATTGGGTGTTATGCCGGATCTACAAGAAGGGTAACACACAAAGGTCACATGAGAGGGATGATTCCATGGACGACATGATTGGAGAAGTACCTCCTTCCATCAACGTGGGCCACATGAATGCGAGGTTTCACCTTTCAAAGATGTCCACGAGCTACAGTGGTGCATTGTTGGAAAATGACAGAAACACGTTAGAAGGTGTGGTTATAGGCAATGGTAATGTCAATGGAATCAACACTAATTCAATAAATGCCATATCATCATCATCATCTCATCATCAGTTTGCCTCCTCAAACTCCAAGGCAGAGCTTCTTCCTTTTGCCCCTTCAAACAACAACACTTCTAATTCAGCCTCCAAAAGAACACTCTCATCACTCTATTGGAATGTTGATGATGATAATGATGATGATGATCACAAACACTTCAATTTGGACAGTAATGGGAATGTGAGTGTTTTGAGGACTGAAGAGAATAATAATAATACTAATGGTACTTCTGGCTCCTTTGCCACTCTGCTTAACCAACTTCCACAAACACCTTCATTGCCCCAAATAGATGGGTTACTTCGAACACCATATCAAATACAAGGGACCAATTGGTATGGTTAA 1110 0.4459 MESTEDSSTSSQQQQQPNLPPGFRFHPTDEELVVHYLKKKVDSVPLPVSIIADVDLYKFDPWELPAMASFGAEEWYFFSPRERKYPNGARPNRAATSGYWKATGTDKPICSGTQKVGVKKSLVFYGGKPPKGVKTDWIMHEYRVAENKPNNRPPGCDLGHKKNSLRLDDWVLCRIYKKGNTQRSHERDDSMDDMIGEVPPSINVGHMNARFHLSKMSTSYSGALLENDRNTLEGVVIGNGNVNGINTNSINAISSSSSHHQFASSNSKAELLPFAPSNNNTSNSASKRTLSSLYWNVDDDNDDDDHKHFNLDSNGNVSVLRTEENNNNTNGTSGSFATLLNQLPQTPSLPQIDGLLRTPYQIQGTNWYG* 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g2075 369 MobiDBLite consensus disorder prediction 1 24 - -
Gso6g2075 369 Gene3D NAC domain 28 183 IPR036093 GO:0003677|GO:0006355
Gso6g2075 369 MobiDBLite consensus disorder prediction 1 21 - -
Gso6g2075 369 Pfam No apical meristem (NAM) protein 20 144 IPR003441 GO:0003677|GO:0006355
Gso6g2075 369 ProSiteProfiles NAC domain profile. 19 178 IPR003441 GO:0003677|GO:0006355
Gso6g2075 369 PANTHER NAC TRANSCRIPTION FACTOR-LIKE PROTEIN 1 349 - -
Gso6g2075 369 SUPERFAMILY NAC domain 10 178 IPR036093 GO:0003677|GO:0006355
Gso6g2075 369 PANTHER NAC TRANSCRIPTION FACTOR 56 1 349 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g2075 Gso-Chr6 38600591 38603456 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g2075 1 368 NAC Transcription Factor Family AT3G15510 49.364 1.01e-111 328
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Gso6g2075 NAM 7.3e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g2075 - - gmx:100812933 662.144
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso6g2075 6 38600591 38603456 Gso6g2075 6 38600591 38603456 ECH