Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g2058 ATGGGGCCTCTTGTGATTTCTTCAAGTTTTCTTTGGTATCTTAGCTTTGTTCTAAGTGCTGCAGTTAGAGTAGTCCACGTCCAAGCTAATTACGGTTGGCTTAACGCTCATGCAACGTTCTATGGGGCCAATCAAAATCCCACCACCCTTGGGGGAGCATGTGGCTACGATGATACCTTTCATGCGGGGTTTGGTGTGAACACCGCAGCGGTGAGCACTATGCTGTTCAGAGACGGTGAGGTTTGTGGTGCATGCTACCAAGTGATGTGTGACTTTAGGGCAGACCCAAAATGGTGCCTTATTAGCCGCGGCGTGACAGTAACCGCCACAAACTTTTGCCCTCCGAATAACCATGGAGGGTGGTGTGACCCACCTTACCATCACTTCGACATGTCCATGCCTGCTTTCTTTCGCATTGCACGACAAGGCAATGAAGGCATTGTTCCTGTCCTTTATAGAAGGGTGACATGCAAGAGAAGAGGGGGAGTGAGGTTCACACTGAAGGGTCAATCCAACTTCAACATGGTGATGATATCAAATGTGGGTGGAAGTGGGGATGTGAAGGCTGTGTGGATCAGAGGATCAAGAAGTGGAGCATGGCTGCCAATGCACAGGAACTGGGGTGCCAACTGGCAGAGCAGTGCAGATCTAAGAAACCAAAGACTCTCATTCAAGATGACATTGGTTGATGGCAAGACACTGGTGTTCCTTAATGTTGTGCCTTCCACTTGGAGCTTTGGACAAACATTTTCATCCAAGAGTCAGTTCTTTTAG 774 0.4858 MGPLVISSSFLWYLSFVLSAAVRVVHVQANYGWLNAHATFYGANQNPTTLGGACGYDDTFHAGFGVNTAAVSTMLFRDGEVCGACYQVMCDFRADPKWCLISRGVTVTATNFCPPNNHGGWCDPPYHHFDMSMPAFFRIARQGNEGIVPVLYRRVTCKRRGGVRFTLKGQSNFNMVMISNVGGSGDVKAVWIRGSRSGAWLPMHRNWGANWQSSADLRNQRLSFKMTLVDGKTLVFLNVVPSTWSFGQTFSSKSQFF* 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g2058 257 PRINTS Expansin signature 63 77 IPR002963 GO:0009664
Gso6g2058 257 PRINTS Expansin signature 92 103 IPR002963 GO:0009664
Gso6g2058 257 PRINTS Expansin signature 105 115 IPR002963 GO:0009664
Gso6g2058 257 PRINTS Expansin signature 119 136 IPR002963 GO:0009664
Gso6g2058 257 PRINTS Expansin signature 161 173 IPR002963 GO:0009664
Gso6g2058 257 PRINTS Expansin signature 173 194 IPR002963 GO:0009664
Gso6g2058 257 PRINTS Expansin signature 209 230 IPR002963 GO:0009664
Gso6g2058 257 PRINTS Expansin signature 238 254 IPR002963 GO:0009664
Gso6g2058 257 SUPERFAMILY PHL pollen allergen 159 252 IPR036749 -
Gso6g2058 257 Pfam Lytic transglycolase 68 152 IPR009009 -
Gso6g2058 257 Pfam Expansin C-terminal domain 163 241 IPR007117 -
Gso6g2058 257 PANTHER EXPANSIN-A12 6 256 - -
Gso6g2058 257 PANTHER EXPANSIN-A15 6 256 IPR002963 GO:0009664
Gso6g2058 257 SUPERFAMILY Barwin-like endoglucanases 32 180 IPR036908 -
Gso6g2058 257 Gene3D - 162 257 IPR036749 -
Gso6g2058 257 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 51 162 IPR007112 -
Gso6g2058 257 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 172 252 IPR007117 -
Gso6g2058 257 PRINTS Expansin/Lol pI family signature 32 47 IPR007118 GO:0005576
Gso6g2058 257 PRINTS Expansin/Lol pI family signature 50 68 IPR007118 GO:0005576
Gso6g2058 257 PRINTS Expansin/Lol pI family signature 72 90 IPR007118 GO:0005576
Gso6g2058 257 PRINTS Expansin/Lol pI family signature 145 161 IPR007118 GO:0005576
Gso6g2058 257 PRINTS Expansin/Lol pI family signature 200 214 IPR007118 GO:0005576
Gso6g2058 257 PRINTS Expansin/Lol pI family signature 238 252 IPR007118 GO:0005576
Gso6g2058 257 SMART dpbb_1 68 152 IPR007112 -
Gso6g2058 257 Gene3D - 19 158 IPR036908 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g2058 Gso-Chr6 38153394 38156639 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g2058 12 257 Expansin Gene Family AT3G15370 60.145 2.41e-116 333
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g2058 - - gmx:100803855 548.895
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso6g2058 6 38153394 38156639 Gso6g2058 6 38153394 38156639 ECH