Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g2048 ATGGCTGAGAGGTTGACAGCTATCCAAAATTTTGGTTTTTTGGTCAAAATACCCATAGCTGAGAGCTTGACACCTGTCCAAGATTTTGGCGTGAGGCTGTGGTTTCCAGTTCGTGATTTTCGTTCTTCTGTGGTTGAAGGTCTATGTAATTTTATGGCGAGGATTCCTGACAAGATTAAGTCTATTGATGGATCAAAAGAAACGCTTAAACTTGCTGTTAGGATCACCGATCTTTGGTTCGTTGGGACTCCTAACAAGTCTGAGCAAGCGAAGATGGTTTTTGTTGATTCTGAGGAATTTAAAGAGAGGCTTTTAGATTTAGGTGTTGAGGTGAGTCGAGTTTTGCTACCTGGCGATCAAGCAAGCTCACAAGTTTCAGGGGGAAGTCAGCTATCATCAAAGGATTCATTTCTTTCAAAGGCTGAAGCCAAAACTATTTTAGAAATCAATGCCATTTCTGAGGAAGATGTTTGTGTTACGGTGGGGACTATTAGCAAAATAGTCATGGATAACCATTCATGGTGTTATCCAGCCTGTGCTCAATGTCATAGGAAAACTGACATCCAAACAGGACCATTCACATGTGGATGTGGCAAGGATAATGATCAGAGTGTTCTGAGGTATAGAGTTGAAGTGATGGTTACCCAAAACAATGAGAGTAACAAATTTTTGCTCTGGGACCGTGAATGTGCTGAATTGATTGGTGAAACAGCTGATGATGTGAATATGGTCAAGATTGAAGATGGTGATCTTGATTTGAATGCTTCCCCTCAAGCACTTGACAAATTGTTGGGTCATGTGCTTGCTTTTAAGGTCGGGATTCAATCAAAATTCAAAAATGCAGTTGTACTTAGATACTCAAAAGACCTGAATTTGATCAATGTTGTTCTCGAGATGCTGCCTGATAGTGAGGCATGTTCCAAAATAGATCCTTCCAATGTTGATTGCAATGATGCTACACAAGCTGAACGTCAATCTTTGTCTGTCACAGCTGACCATGATCCGGTTGCGGGATTGCCTTTAACACCCAAAAAGCGGATGTCATCTGATGAAGCCGATGATGAGTTAGGGAGCTCTCAAATTTCGCCAGCCCAACTATCGTCTAACCAATTGACAAGACATTCTCATAAGAGCTAA 1137 0.4125 MAERLTAIQNFGFLVKIPIAESLTPVQDFGVRLWFPVRDFRSSVVEGLCNFMARIPDKIKSIDGSKETLKLAVRITDLWFVGTPNKSEQAKMVFVDSEEFKERLLDLGVEVSRVLLPGDQASSQVSGGSQLSSKDSFLSKAEAKTILEINAISEEDVCVTVGTISKIVMDNHSWCYPACAQCHRKTDIQTGPFTCGCGKDNDQSVLRYRVEVMVTQNNESNKFLLWDRECAELIGETADDVNMVKIEDGDLDLNASPQALDKLLGHVLAFKVGIQSKFKNAVVLRYSKDLNLINVVLEMLPDSEACSKIDPSNVDCNDATQAERQSLSVTADHDPVAGLPLTPKKRMSSDEADDELGSSQISPAQLSSNQLTRHSHKS* 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g2048 378 Pfam Replication factor-A C terminal domain 162 248 IPR013955 -
Gso6g2048 378 MobiDBLite consensus disorder prediction 325 378 - -
Gso6g2048 378 MobiDBLite consensus disorder prediction 354 372 - -
Gso6g2048 378 CDD RPA1_DBD_C 140 272 IPR013955 -
Gso6g2048 378 PANTHER REPLICATION FACTOR A 1, RFA1 100 257 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Gso6g2048 378 SUPERFAMILY Nucleic acid-binding proteins 144 275 IPR012340 -
Gso6g2048 378 PANTHER RPA1 DOMAIN PROTEIN, PUTATIVE-RELATED 100 257 - -
Gso6g2048 378 Gene3D - 124 294 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g2048 Gso-Chr6 37168000 37171894 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g2048 84 252 Core DNA Replication Machinery Family AT5G08020 28.736 1.35e-06 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g2048 - - gsj:114416186 747.658