Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g2034 ATGGGTGGTGTCTGTTGCAAGCCCTCTGCCATTGAGGATAGCAAGGAGAGTCCAAGGGAGCGTATGTCGACCAAGTCGGCTTCGTTGGACTCTTGTGTGCCGAGGGGTGCTTCGTTGAGGAGGGAGGATGCATATAGGGTGAAAGATAGGTATGATGGTAATAATGTGAGGACTGCTTTGATTGATAAGCAAGGGAACGGTTCTGTGCGGTTGCAAAGTGAAAATGTTGAGAGGAAGAGGGAGAGAATGGAGTGTGTTGTTGCTGCTCAACAACATCCGGGGGCTGGTAGTGTTCCCAAGGCCTTGGAAGGGGAGCAGGTTGCAGCTGGATGGCCATCCTGGCTGGCAGCAGTGGCTGGAGAGGCTATCAAGGGATGGTTGCCGCGCCGTGCCGATTCGTTCGAGAAGTTGGATAAAATTGGACAGGGAACTTATAGTAATGTTTATAGGGCTCGTGATCTTGAGCAAAAGAAAATTGTTGCTTTGAAAAAAGTGAGGTTTGATAATCTTGAGCCAGAGAGTGTTCGCTTCATGGCAAGGGAAATTCACATTCTACGTAGGCTTGATCATCCAAATGTCATAAAACTGGAAGGTCTTGTCACATCAAGGATGTCTTGCAGCTTATACCTAGTTTTTGAATACATGGAGCATGATTTGGCTGGGCTTGCATCACATCCTAAACTGAAGTTTACTGAAGCACAGGTAAAATGTTACATGCAGCAACTTTTACGAGGACTTGAACACTGCCACAACTGTGGTGTGCTGCACCGTGACATTAAGGGTTCGAACCTTTTGATTGACAACAATGGCATCTTGAAGATTGCAGACTTTGGTTTGGCAAGTGTTTTTGATCCAAATCGAACACAGCCTCTGACAAGCCGAGTTGTCACTCTTTGGTATCGCCCACCAGAGCTTTTACTGGGTGCCACATACTATGGCACTGCTGTAGATTTATGGAGTACAGGCTGTATACTTGCTGAGTTGTATGCTGGCAAACCTATAATGCCTGGAAGAACTGAGGTGGAGCAGTTACATAAAATTTTTAAACTGTGTGGTTCACCTTCTGAGGATTATTGGAGAAAATCAAAGTTGCCACATGCAACAATATTTAAGCCCCAACAACCCTATAGGCGTTGTGTTGCTGACACATTCAAGGATTTCGCTGCACCTGCTTTAGCACTCATGGAGACTCTTTTGTCCATAGATCCTGCTGATCGTGGAACTGCAGCATCTGCTTTGAAGAGTGAGTTCTTTACAACAAAGCCTCTACCTTGTGATCCTTCAAGTTTGCCAAAGTATCCTCCTAGCAAAGAATTTGATGCCAAACTTCGGGATGAACAAGCAAGAAGGCAGGGTGCAACAGGAAGCAAGGGCCAGAGACATGATCTTGAAAGAAGAGGGGCAAGAGAATCTCGAGCTGTTCCTGCACCTGATGCCAATGCTGAACTGCCACTGTCAATGCAGAGACAAAGTCAGGCTCAATCAAAAAGCAGAAGTGAGAAGTTTAATCCTCATCTTGAAGAAGCTTCTGGATTTCCCATCGATCCCCCCAGACCGTCACAAGCTGTAGAAGTAGGTATAGAACCTCAGGTACCGCAGCATAAAAGAGCCTCCCATTCGGGTCCGCTGGCTCACCGAACTGCATGGGGTAAAGCTGGGAAGAACCAGGATGATGCTCCAAAGATTTCAGTCGGGGGCGATCTATCAACAATCTCAGGCTTAGTTGCAGCTAGGAGTATGTTGTCAGATGATCGCAGAGAAAGATCTGGATCGTCACAAATGGAGGCATCAAAATTGATGAACAGGTTCCCAGGATCATTCAAGGACATCTCTGAATTGTTGATAAAACAGGATCAAAGGCATCATGTACCGGGCCAAGTAGGCACTTCCCAAAAGGAAGAAGGGAGAAGCAGCAACAAAGACCTTGTTCTTGTTGGTTATGGATCAAAGGGTCATAAAATTCATTACTCTGGTCCATTAACATCAAGCAACATGGATCAGGTGTTGAAAGACCATGACTGCCAAATTCAAGAGGCGGTTAGACGGGCACGTTTGGATAAGGCAAAAATGAGAAGGCTCCAAGCTGAAGGGAACCAGATAACCAATTCATTATTTGTTTCAGGCCGTTGA 2130 0.4606 MGGVCCKPSAIEDSKESPRERMSTKSASLDSCVPRGASLRREDAYRVKDRYDGNNVRTALIDKQGNGSVRLQSENVERKRERMECVVAAQQHPGAGSVPKALEGEQVAAGWPSWLAAVAGEAIKGWLPRRADSFEKLDKIGQGTYSNVYRARDLEQKKIVALKKVRFDNLEPESVRFMAREIHILRRLDHPNVIKLEGLVTSRMSCSLYLVFEYMEHDLAGLASHPKLKFTEAQVKCYMQQLLRGLEHCHNCGVLHRDIKGSNLLIDNNGILKIADFGLASVFDPNRTQPLTSRVVTLWYRPPELLLGATYYGTAVDLWSTGCILAELYAGKPIMPGRTEVEQLHKIFKLCGSPSEDYWRKSKLPHATIFKPQQPYRRCVADTFKDFAAPALALMETLLSIDPADRGTAASALKSEFFTTKPLPCDPSSLPKYPPSKEFDAKLRDEQARRQGATGSKGQRHDLERRGARESRAVPAPDANAELPLSMQRQSQAQSKSRSEKFNPHLEEASGFPIDPPRPSQAVEVGIEPQVPQHKRASHSGPLAHRTAWGKAGKNQDDAPKISVGGDLSTISGLVAARSMLSDDRRERSGSSQMEASKLMNRFPGSFKDISELLIKQDQRHHVPGQVGTSQKEEGRSSNKDLVLVGYGSKGHKIHYSGPLTSSNMDQVLKDHDCQIQEAVRRARLDKAKMRRLQAEGNQITNSLFVSGR* 710
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g2034 709 Pfam Protein kinase domain 134 418 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso6g2034 709 MobiDBLite consensus disorder prediction 446 472 - -
Gso6g2034 709 PANTHER CELL DIVISION PROTEIN KINASE 1 691 - -
Gso6g2034 709 MobiDBLite consensus disorder prediction 579 599 - -
Gso6g2034 709 ProSiteProfiles Protein kinase domain profile. 134 418 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso6g2034 709 MobiDBLite consensus disorder prediction 446 567 - -
Gso6g2034 709 MobiDBLite consensus disorder prediction 619 638 - -
Gso6g2034 709 Gene3D Transferase(Phosphotransferase) domain 1 217 457 - -
Gso6g2034 709 SUPERFAMILY Protein kinase-like (PK-like) 128 426 IPR011009 -
Gso6g2034 709 Gene3D Phosphorylase Kinase; domain 1 121 216 - -
Gso6g2034 709 CDD STKc_CDK9_like 134 418 - -
Gso6g2034 709 MobiDBLite consensus disorder prediction 484 499 - -
Gso6g2034 709 MobiDBLite consensus disorder prediction 1 33 - -
Gso6g2034 709 Coils Coil 676 696 - -
Gso6g2034 709 SMART serkin_6 134 418 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso6g2034 709 ProSitePatterns Serine/Threonine protein kinases active-site signature. 254 266 IPR008271 GO:0004672|GO:0006468
Gso6g2034 709 PANTHER CYCLIN-DEPENDENT KINASE 1 691 - -
Gso6g2034 709 ProSitePatterns Protein kinases ATP-binding region signature. 140 163 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g2034 Gso-Chr6 36705157 36713190 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g2034 126 475 Core Cell Cycle Gene Families AT5G10270 52.459 3.14e-119 365
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Gso6g2034 Pkinase 3.7e-69 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g2034 - - gmx:100798022 1404.04
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso6g2034 6 36705157 36713190 Gso6g2034 6 36705157 36713190 ECH