Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g2033 ATGGGTGATATTAGCTTGAGGCTATGGTTGGATAAACCTGAACGATCAGTGAATGTCTTTGAATGCTTGCACATATTCAGGGAAATAGTAGAAATTGTTCATGCGGCTCATTCTCAAGGAATTGTTGTTCATAATGTGAGGCCCTCCTGCTTTGTCATGTCAGCTTTCAACCATGTCTGGCTTATCGAGTCAGCGACTTGTTCACATTCTGGATCAGATACATTAGAAGAGGCTGTTGAGATCAAAACTCCAACACCTACCTCTATCCATGATATGCATCAGCGGAGATGTTTAGGAAGTGAAGATTTTGTGCCTGTCAAGACTTCAACAGCTTCTTTGACAGACTCCAGTTGCATGTTGTCAAGTGTGGTGTTTCTGGCACCTGCATCATCAGTTGATGACACAGAAGAAAATAAAATGAAAAACAGGAGAAAGGATGAGGAAGTTGCAGGAAAGAAGCAATCATTTCCAACAAAACAGGTACTGCAGATGGAGACAAGTTGGTATACTAGTCCTGAAGAGGTTGCTGGTACTTCTTTGCCTTCCTGTGCTTCAGACGTTTACCAGTTGGGAGTTCTTCTTTTTGAGCTATTTTGTCCACTCATCTCAAGAGAAGAAAAGAGAAGAACCATGTCCAGCCTAAGACATAGAGTTCTTCCTCCACAGTTACTTTTAAAGTGGCCTAAAGAAGCTTCATTTTGCTTGTGGTTATTACATCCTGAGCCTAATAGTCGTCCAACAATAGGGGAGTTGTTGCAGAGTGAGTTTCTTAATGAACCAAGAGATGATATAGAAAAGTGTGAAGCAGCGGTAGAAATTGGAGAAAGGATAGATGACCAGGAGTTGTTGCTAGAATTCCTTTCGTTAATTCAACAGAAAAAAGGGGAAGCTGCTGAGAAGTTACAACATACTATCTCATTTTTGTGTTCAGATATTGAAGAAGCGACTAAGCAGAAAACTGTATTTAAAGAGATGACAAGCACTGAACTAGGGAGTGATGATTGTTCAACATCAAGTTTCCCATCCATTACTGTTGTTGGGAATGAGGATTCTGCTTGTCTAGGGACCAGAAAACGGGTCAGAACTATTCCGTGTGTTGATGACACTGACACTGAAGGATGTGAATGTGATAGTAACATGGTTGATGATCAGAAAAATGACATGAGTATTCTTTCAAAAACTCCACGGTTTTTGAATAATTTAAAGAAACTAGAGTCAGCATACTTTTTGACACGATGCAAATCTGCCTATTCCTCACGGAAACTTGTGGTTCAAGATTCACCTATTGATATTACTGATGAAAAAGGGTCTGTTGTTGTGGCTGAAAGGAATTATGCCAATAAAGTAGAATTAAAAGAGATGTCCAGGGAGGGCAAAAGTCCTTGGACAAATCCTTTCCTTGAGGGTTTGTGCAAGTACCTATCGTTCAGTAAGTTGAAGGTTAAGGCTGATCTTAAACAAGGGGATCTTTTGCAGTCTTCCAACCTGGTATGCTCACTCAGCTTTGATCGCGATGCAGAATTTTTTGCTACTGCGGGAGTAAATAAGAAGATTAAAGTTTTTGAATGTAACACAACCATAAATGAGTATCGTGATATCCACTATCCAGTAGTGGAGATGGTTAGCCGGTCAACATTGAGTAGTACATGTTGGAATACTTACATCAAGAGTCAAATTGCTTCGAGTAACTTTGAAGGTGTTGTACAGTTATGGGATGTGACAAGAAGTCAAGTGCAGTCTGAAATGAAGGAGCATGAACGAAGGGTATGGTCTATTGATTTCTCATCAGCAGACCCAACATTGTTAGCAAGTGGGAGTGATGACGGTTCTGTCAAGCTATGGAATATCAATCAGGGAGTTAGTGTTGGTACCATCAAAACAAAGGCAAATGTGTGTTGTGTTCAGTTTCCCCTTGATTTTGCTCATTTCCTTGCATTTGGTTCAGCAGATCACCAGATATATTACTATGATCTTCGCAACCTGAAAGTGCCTCTTTGTGCAATGGTTGGACATGATAAGACAGTGAGCTACATCAAGTTTGTAGACACCATGAGCCTAGTCTCTGCATCCACAGATAACACATTGAAGCTTTGGGATTTGTCCATGTGTGCTTCTCGAGTTATAGACTCACCAATTCAATCATTCACTGGTCATAAGAATGTTAAGAACTTCGTGGGGTTGTCTATATCTGATGGTTACATTGCTACTGGTTCAGAGACAAACGAGGTGTTCATATACCATAAGGCTTTTCCCATGCCAGCATTATCTTTCAAATTTTACAGTAGTGACCCTCTTTCTGGGAATGAAGAGGATGATTCGGCACAGTTCATCACTTCTGTTTGTTGGCGCGGTCAGTCATCCACCTTAGTGGCTGCAAATTCCACAGGAAATGTCAAAATTCTGGAGATGACTTAA 2415 0.4058 MGDISLRLWLDKPERSVNVFECLHIFREIVEIVHAAHSQGIVVHNVRPSCFVMSAFNHVWLIESATCSHSGSDTLEEAVEIKTPTPTSIHDMHQRRCLGSEDFVPVKTSTASLTDSSCMLSSVVFLAPASSVDDTEENKMKNRRKDEEVAGKKQSFPTKQVLQMETSWYTSPEEVAGTSLPSCASDVYQLGVLLFELFCPLISREEKRRTMSSLRHRVLPPQLLLKWPKEASFCLWLLHPEPNSRPTIGELLQSEFLNEPRDDIEKCEAAVEIGERIDDQELLLEFLSLIQQKKGEAAEKLQHTISFLCSDIEEATKQKTVFKEMTSTELGSDDCSTSSFPSITVVGNEDSACLGTRKRVRTIPCVDDTDTEGCECDSNMVDDQKNDMSILSKTPRFLNNLKKLESAYFLTRCKSAYSSRKLVVQDSPIDITDEKGSVVVAERNYANKVELKEMSREGKSPWTNPFLEGLCKYLSFSKLKVKADLKQGDLLQSSNLVCSLSFDRDAEFFATAGVNKKIKVFECNTTINEYRDIHYPVVEMVSRSTLSSTCWNTYIKSQIASSNFEGVVQLWDVTRSQVQSEMKEHERRVWSIDFSSADPTLLASGSDDGSVKLWNINQGVSVGTIKTKANVCCVQFPLDFAHFLAFGSADHQIYYYDLRNLKVPLCAMVGHDKTVSYIKFVDTMSLVSASTDNTLKLWDLSMCASRVIDSPIQSFTGHKNVKNFVGLSISDGYIATGSETNEVFIYHKAFPMPALSFKFYSSDPLSGNEEDDSAQFITSVCWRGQSSTLVAANSTGNVKILEMT* 805
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g2033 804 MobiDBLite consensus disorder prediction 135 155 - -
Gso6g2033 804 ProSitePatterns Trp-Asp (WD) repeats signature. 686 700 IPR019775 -
Gso6g2033 804 Gene3D - 468 804 IPR015943 GO:0005515
Gso6g2033 804 MobiDBLite consensus disorder prediction 135 153 - -
Gso6g2033 804 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 582 619 - -
Gso6g2033 804 SMART WD40_4 767 802 IPR001680 GO:0005515
Gso6g2033 804 SMART WD40_4 575 615 IPR001680 GO:0005515
Gso6g2033 804 SMART WD40_4 533 572 IPR001680 GO:0005515
Gso6g2033 804 SMART WD40_4 487 522 IPR001680 GO:0005515
Gso6g2033 804 SMART WD40_4 708 747 IPR001680 GO:0005515
Gso6g2033 804 SMART WD40_4 661 699 IPR001680 GO:0005515
Gso6g2033 804 SMART WD40_4 618 657 IPR001680 GO:0005515
Gso6g2033 804 SUPERFAMILY WD40 repeat-like 492 802 IPR036322 GO:0005515
Gso6g2033 804 Coils Coil 298 318 - -
Gso6g2033 804 SUPERFAMILY Protein kinase-like (PK-like) 3 265 IPR011009 -
Gso6g2033 804 Pfam WD domain, G-beta repeat 669 699 IPR001680 GO:0005515
Gso6g2033 804 Pfam WD domain, G-beta repeat 579 615 IPR001680 GO:0005515
Gso6g2033 804 ProSitePatterns Trp-Asp (WD) repeats signature. 602 616 IPR019775 -
Gso6g2033 804 PANTHER PROTEIN SPA1-RELATED 2 2 804 IPR044630 GO:0009640
Gso6g2033 804 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 668 701 - -
Gso6g2033 804 ProSiteProfiles Trp-Asp (WD) repeats profile. 668 701 IPR001680 GO:0005515
Gso6g2033 804 Gene3D Transferase(Phosphotransferase) domain 1 4 268 - -
Gso6g2033 804 PRINTS G protein beta WD-40 repeat signature 559 573 IPR020472 -
Gso6g2033 804 PRINTS G protein beta WD-40 repeat signature 602 616 IPR020472 -
Gso6g2033 804 PRINTS G protein beta WD-40 repeat signature 686 700 IPR020472 -
Gso6g2033 804 ProSiteProfiles Protein kinase domain profile. 1 257 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso6g2033 804 ProSiteProfiles Trp-Asp (WD) repeats profile. 582 624 IPR001680 GO:0005515
Gso6g2033 804 PANTHER PROTEIN SPA1-RELATED 3 2 804 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g2033 Gso-Chr6 36529486 36537178 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g2033 568 701 Miscellaneous Gene Families AT5G08390 29.412 4.63e-11 64.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK PEK_PEK Gso6g2033 WD40 0.24 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g2033 - - gmx:100784064 1602.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso6g2033 6 36529486 36537178 Gso6g2033 6 36529486 36537178 ECH