Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g2002 ATGGAGAGGGAGAGAGCATTGTTTGAGAGGGTGAGAAAGAATAGCACAGTGGAAGAGGAAGTGGAAAATGAAGTGGAGGAGGAGGATGAAAGTGGCATTAGTACTACTGAAGAAGAGAAGAAGAAAGGGGTTGGTAGTAGTGGTGGGAGAAGAGGGTCAAGTGGAGGTAGTGGAGGGGTTTCTCCACCTTCATGTCAAGCAGAGAGGTGTGGTGCTGATTTAACTGATGCAAAGAGGTACCATCGCCGCCACAAGGTGTGTGAGTTTCATTCAAAGGCACCTGTTGTGGTGGTTGCAGGGCTAAGGCAGAGGTTTTGCCAGCAATGTAGCAGGTTCCATGACCTGGCAGAGTTTGATGAATCCAAGAGAAGCTGCCGCCGCCGGTTGGCCGGACACAACGAGCGGCGCCGGAAAAGCAACCCGGAAGCTTCCAATGAGGGCAGCACCAAAGGCCATCACCCTAAGGAAACAACACACTGCAGGCTTGCAAATGAGAGGGAGAGAATTCAGATGAACCTACCAGGGAGTTCCGGCTACAAGTCTTTCAACATCAGATGA 558 0.5108 MERERALFERVRKNSTVEEEVENEVEEEDESGISTTEEEKKKGVGSSGGRRGSSGGSGGVSPPSCQAERCGADLTDAKRYHRRHKVCEFHSKAPVVVVAGLRQRFCQQCSRFHDLAEFDESKRSCRRRLAGHNERRRKSNPEASNEGSTKGHHPKETTHCRLANERERIQMNLPGSSGYKSFNIR* 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g2002 185 SUPERFAMILY SBT domain 63 142 IPR036893 GO:0003677|GO:0005634
Gso6g2002 185 MobiDBLite consensus disorder prediction 1 19 - -
Gso6g2002 185 Gene3D - 55 126 IPR036893 GO:0003677|GO:0005634
Gso6g2002 185 MobiDBLite consensus disorder prediction 1 68 - -
Gso6g2002 185 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 27 161 IPR044817 GO:0003677
Gso6g2002 185 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 27 161 - -
Gso6g2002 185 MobiDBLite consensus disorder prediction 129 185 - -
Gso6g2002 185 MobiDBLite consensus disorder prediction 170 185 - -
Gso6g2002 185 ProSiteProfiles Zinc finger SBP-type profile. 62 139 IPR004333 GO:0003677
Gso6g2002 185 MobiDBLite consensus disorder prediction 135 166 - -
Gso6g2002 185 Pfam SBP domain 65 138 IPR004333 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g2002 Gso-Chr6 35459661 35461252 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g2002 51 142 SBP-box Gene Family AT2G33810 66.304 1.76e-40 132
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Gso6g2002 SBP 1.1e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g2002 - - gmx:100800646 314.309