Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g2000 ATGGCTGACATAGCAGGCCTGGCTGAGGCTGCAGGGGCAAGATTTAGTTCACTGGAGCTCATTGGACAGGGATCATTTGGCGATGTGTACAAAGGGTTTGACAGGGAGCTCAACAAAGAAGTTGCTATCAAAGTGATTGATTTGGAAGAATCAGAGGATGAAATTGAGGACATTCAGAAGGAAATTTCTGTTCTGTCTCAATGTCGATCTCCATACATTACTGAGTATTATGGTTCCTTTCTTAATCAAACTAAACTTTGGATAATAATGGAATACATGGCTGGAGGTTCTGTTGCTGATCTACTCCAATCAGGTCCTCCACTTGATGAAATGTCAATTGCTTGCATTCTACGTGATTTGCTTCATGCAATTGATTACCTACATAATGAAGGAAAAATTCATAGAGACATTAAAGCTGCAAACATTTTATTGACTGATAATGGTGATGTAAAGGTTGCAGATTTTGGTGTTTCTGCACAGTTAACAAGAACTATATCAAGGAGAAAGACCTTTGTAGGAACACCATTTTGGATGGCTCCTGAGGTTATTCAAAACTCAGAAGGATATAATGTGAAGGCAGATATATGGTCTCTGGGCATTACTGCAATAGAGATGGCAAAAGGGGAGCCTCCACTTGCTGATCTTCATCCAATGAGAGTGCTTTTCATCATACCCCGAGAGAATCCACCACAACTAGATGAACACTTTTCTCGCTATATGAAAGAATTTGTTTCATTGTGCTTGAAGAAGGTTCCTGCCGAGAGGCCAAGTGCTAAGGAGCTTCTTAGACATCGTTTCATTCGGAATGCTAGGAAGAGTCCAAAGCTATTAGAGAGAATAAGGGAGCGTCCAAAGTACCAAATAAAGGAAGATCAGATGACACCTAGAAATGCCCCAAGGGGGATGGGGGAGGCATCTGATACTATTAAGGTTGCCAAAGATTTAAGGGGTGACGAAACTAATCAGCCTAGTGGCCAAGGTAAATCCCTGAGAAGTTCTGGATGGGACTTCAGTATTGGTGGATCTCAAGGTACTGGAACCTTTCGTAGTGTCTCACGGCCACCACAGTTTAGAGATAAGAAAATTGAACTTTCAAATCATCAGCTTAACCAAAGAAAAAGTCCAGAGAGTGGCTATCAAGTGGGATCTGACAATAAAAGTGCACATAATGAGTCACTAGAAACTTATTTTGGAAAAGATCTTGGAGTTGCCTACCATGATGAACATCCTGATAATCACCTTGAAGATGATGAATTTTCTGGGAATGGATCAGGAACTGTTGTTATTCGGTCTCCAAAAGGACCCCAGCCATCACTGTTTCGTGACCAAAGTTCCCGGTCTAGCAGCAGCTATGCTTCTTTTGAAGATGTTTCTACTAGTGGAACTGTTGTTTTGCGTAGCCAGTACAATGATTCTGATTCTCCACAGACACCAAGGTCCCGACTGGGACTTAATAGCAGAAATTCAAATGCCTCACTGGAAGATAGTGCTACAAATCTTGCTGAGGCTAAGGTTGCTATCCAAGGTGGATTAAGGAAAGTGAATATCCGAGAGAGATTTGCATTGGGAAAACTCAACAATGATGTACAGGATAGCAGGAGAGGTCAAATATCAAGCAGCTCTGATTCTTCCAGACCATCTCGTGAATACTTTGATGCACAAAAGGGATTTTCAAGATCACACTATTCTATTGATGATGAAGAAAGTGCCAAAATAATCTCATCCTCTGCGCCGCTATCCGTTTTGCTTATTCCTTCATTAAAAGAGGCCGTTGCTGATGATCCAGACGGGTCAATAGTGCAAATTGTTATCGATGCTCTTGTAAACATGGAGAGTACAAAGCCTCAATCCTGTGATGTTCTTGTCAAAAAGTTGCTTCAGCAGTTGGCAAGTTCAAAGGAATCTTCATTGAAGGACCTGCAAGAACTGGCTGGCCAAATATTCAGCAAGACCAAATCAGCTGAAGAAAACCGAAATGCAGAGTCTGATAACAAGAAGAAACAAAACAAGGAAGTTCATTCAAATAGCAATTTAAGCCCTCTTGCAAGATTTCTTCTCTCAAGATGGCAAGGCCAAACCTCGCGGGATCTAAATCCAGCTTGA 2103 0.4156 MADIAGLAEAAGARFSSLELIGQGSFGDVYKGFDRELNKEVAIKVIDLEESEDEIEDIQKEISVLSQCRSPYITEYYGSFLNQTKLWIIMEYMAGGSVADLLQSGPPLDEMSIACILRDLLHAIDYLHNEGKIHRDIKAANILLTDNGDVKVADFGVSAQLTRTISRRKTFVGTPFWMAPEVIQNSEGYNVKADIWSLGITAIEMAKGEPPLADLHPMRVLFIIPRENPPQLDEHFSRYMKEFVSLCLKKVPAERPSAKELLRHRFIRNARKSPKLLERIRERPKYQIKEDQMTPRNAPRGMGEASDTIKVAKDLRGDETNQPSGQGKSLRSSGWDFSIGGSQGTGTFRSVSRPPQFRDKKIELSNHQLNQRKSPESGYQVGSDNKSAHNESLETYFGKDLGVAYHDEHPDNHLEDDEFSGNGSGTVVIRSPKGPQPSLFRDQSSRSSSSYASFEDVSTSGTVVLRSQYNDSDSPQTPRSRLGLNSRNSNASLEDSATNLAEAKVAIQGGLRKVNIRERFALGKLNNDVQDSRRGQISSSSDSSRPSREYFDAQKGFSRSHYSIDDEESAKIISSSAPLSVLLIPSLKEAVADDPDGSIVQIVIDALVNMESTKPQSCDVLVKKLLQQLASSKESSLKDLQELAGQIFSKTKSAEENRNAESDNKKKQNKEVHSNSNLSPLARFLLSRWQGQTSRDLNPA* 701
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g2000 700 PANTHER STERILE20-LIKE KINASE, ISOFORM B-RELATED 1 698 - -
Gso6g2000 700 ProSitePatterns Protein kinases ATP-binding region signature. 21 44 IPR017441 GO:0005524
Gso6g2000 700 MobiDBLite consensus disorder prediction 651 679 - -
Gso6g2000 700 MobiDBLite consensus disorder prediction 654 672 - -
Gso6g2000 700 PANTHER PROTEIN KINASE SUPERFAMILY PROTEIN 1 698 - -
Gso6g2000 700 CDD STKc_MST3_like 14 287 - -
Gso6g2000 700 MobiDBLite consensus disorder prediction 368 388 - -
Gso6g2000 700 MobiDBLite consensus disorder prediction 319 352 - -
Gso6g2000 700 SMART serkin_6 15 267 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso6g2000 700 Pfam Protein kinase domain 16 267 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso6g2000 700 Gene3D Transferase(Phosphotransferase) domain 1 12 300 - -
Gso6g2000 700 MobiDBLite consensus disorder prediction 466 495 - -
Gso6g2000 700 ProSiteProfiles Protein kinase domain profile. 15 267 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso6g2000 700 MobiDBLite consensus disorder prediction 424 453 - -
Gso6g2000 700 Coils Coil 650 671 - -
Gso6g2000 700 MobiDBLite consensus disorder prediction 407 453 - -
Gso6g2000 700 MobiDBLite consensus disorder prediction 316 388 - -
Gso6g2000 700 SUPERFAMILY Protein kinase-like (PK-like) 14 306 IPR011009 -
Gso6g2000 700 Coils Coil 41 68 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g2000 Gso-Chr6 35397004 35407647 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g2000 1 697 MAP Kinase Kinase Kinase Kinase AT3G15220 64.857 0.0 857
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE20-YSK Gso6g2000 Pkinase 4.4e-68 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g2000 K08838 - gmx:100786501 1273.84
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso6g2000 6 35397004 35407647 Gso6g2000 6 35397004 35407647 ECH