Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g1996 ATGAACAAGCTTAATGGAGCAATCCCAATCGAAATTGGCCAACTTCATAAGTTGTCAATACTGAATTTGAGCTGGAATTCTCAGGGTGGATCAATTCCATTTGAGATTACAAAGTTGAGCAATATTACTTTCCTGAACTTGCAAACCAATAATCTAAGTGGTTCCATACCAACATCCATTGACAACTTGAAATTTCTCTTTGAACTCCAACTCAGGGAAAACAAACTAAGTGGTGTGATACCAAGCATGCCGGGGAGTTTGCAGGTGTCATTGAATCTTAGTAGCAACCACTTTAGTGGTAATACTCCCAACAATTTTGGTAATTTGGATAGCCTGCAAGTCTTGGATCTCTCAAATAACAAATTTCCTGGTCCAATTCCCAACCAACTAACTGGAACGTCAACTTTGACACAATTGTTACATGCCAACAATGCACTGCTGTCTGGTGAAATTCCAAAATTCAGTCAACATCTTAAAGTTGTATCTTCTGGAACTGGTCTAATAAATAATACCTCACCTGACCATACAATAGCCAATAGGCCCAACATTGTCTCTAAGAAGGGAATATCTGTTCATGTGACAATTCTCATTGCAATTGTACCAGCTAGTTTTCTTGTTGGCATTGTAATTCAACTGGTTGTCTCAAGAAAAAGTTGTTGGCAACCTCAATTCATCGTAAGTAATTTATTAACTCCTAATGCAATTCACAAATCAAGAATTAACTTTGGTAAAGCATGGAAGTTGTTGCATACATCAAATGTTACTGAAACTAGTTTCAAGTTAATTGCCATGCCCTTTGGATCAATCTATTTTATCAAGAATCTAAACTGTTCTAACAAGATATTGCCATTGGGAAGTCATGATAAATTTGGAAAAGAGCTAGAAGTCTTTGCAAAATTGAACAATTCAAATGTCATGACTCCTTTGGCCTATGTTCTGTCCATTGATACTGCATATATACTATATGAATATATCTCGAATGGCTCCCTCTATGATTTTCTTCATGGAAGCATGCTAGATTAG 1023 0.3646 MNKLNGAIPIEIGQLHKLSILNLSWNSQGGSIPFEITKLSNITFLNLQTNNLSGSIPTSIDNLKFLFELQLRENKLSGVIPSMPGSLQVSLNLSSNHFSGNTPNNFGNLDSLQVLDLSNNKFPGPIPNQLTGTSTLTQLLHANNALLSGEIPKFSQHLKVVSSGTGLINNTSPDHTIANRPNIVSKKGISVHVTILIAIVPASFLVGIVIQLVVSRKSCWQPQFIVSNLLTPNAIHKSRINFGKAWKLLHTSNVTETSFKLIAMPFGSIYFIKNLNCSNKILPLGSHDKFGKELEVFAKLNNSNVMTPLAYVLSIDTAYILYEYISNGSLYDFLHGSMLD* 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g1996 340 SUPERFAMILY L domain-like 2 158 - -
Gso6g1996 340 ProSiteProfiles Protein kinase domain profile. 255 340 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso6g1996 340 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 1 337 - -
Gso6g1996 340 Pfam Leucine Rich Repeat 111 129 IPR001611 GO:0005515
Gso6g1996 340 SUPERFAMILY Protein kinase-like (PK-like) 265 338 IPR011009 -
Gso6g1996 340 Gene3D Ribonuclease Inhibitor 1 172 IPR032675 -
Gso6g1996 340 Gene3D Transferase(Phosphotransferase) domain 1 236 339 - -
Gso6g1996 340 PANTHER F12K21.25 1 337 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g1996 Gso-Chr6 35241711 35242733 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g1996 2 337 Receptor kinase-like Gene Family AT5G56040 30.172 6.93e-27 110
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Gso6g1996 LRR_1 0.41 CL0022
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g1996 - - gmx:102669972 627.861