Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g1991 ATGGTTGAATTAGCCAAGGAAAGCACAACTATGCGTCGTGTGCTGGATCCAATGTTTGTCTACTTTGATTCTAGACAACATTGGGCTCCTCAGAAAGGGTTAGCAATGATAATTTTATCAAGGATGGCCTACTTCATGGAGAACTCAGGGAATCAGCGCTTAATTCTAGCTTCTGTGATACATCATCTGGACCACAAAAATGTCATGAATGATCCTCAACTTAAGACCTGTGTTATTCAGGTTGCCACATCTTTGGCTATGCAAATTAGATCTGAGAGTGGCTTGGCAGAGATTGGTTTTGTTGGTGTCCTTTGCAGACATCTTAGGAAAAGCCTTCAAGCCTCTAGTGAATTTGTTGGAGAGCAAGAATTGAACTTAAATATCTCACTTCAAAATTCCATTGACGATTGCTTACTAGAAATTGCCAATGGGGTAATTGATGCCCAGCCACTTTTTGACTTGATGGCGATAAACCTAGAAAATATTCCATCCGGTGTTGTTGGTAGAGCAACCATTGGATCTCTGATCATCCTTGCTCGTGCAGTCACTTTAGCATTAAGTCACTTACATTCACAGCAGGGATTTCCTGAAGCTCTTCTTGTGCAACTCCTAAAAGTAATGTTGCATTCAGATGAGGAGGCTCGTGTCGGAGCACACCTTATATTTTCCATTCTTCTTTTTCCAAGTTCCTTCCATACGAATGAGATTTCCTCTCTGCGGTCCAGGTATCTAGGTCAACACAACAAAAGGCATTCTCATGCTCCATCTGTGTCTGCATCTGCTTCAATTACAGCTTTACTTGAAAAGCTCCGCAGAAACAGAAACACCAAGGCAGAAAATCATGTGAATATTGTTCATGATCAAGAAAGGGATATTGTGGCAGAAGACTGGAAGCAGGGCTGTGGCTTAAAGAATTCTCCTAACTTTTACAAACTCACTTCTATCATTGATAAGGCTACAGGATCACCAAGTTTGACTGACACAGAGCCATATGTTATGAAACTAACTGAAGATCAAATGGCCCAGCTTCTTTCTGCCTTTTGGATTCAAGCCAATCTTCCTGATAATTTACCTTCAAATATTGAAGCTGTAGCTCATTCATTCATATTGACACTAATTGTCTTACGCATAAAGGTTTCATCTTCTCGAATTACGGGATCTGTGGGTGTGAAGAAGGCATCAAAAGGAGATACCATTTTTTTTTATAATGCAAGAAATTCTCCAGGGCAGTATGATTTATCAAGAATTAATCATTTGCATAGTAGTTTTGTTCCTGAAGATGTTCCTGATGCTGCTTCCGAGAAAGATCTGGGTAACGAGTTTTTCAAGCAGAAAAAGTTTAAGGAAGCTAGAGACTGCTATTCAAGGAGCATTGCCTTATCACCAACAGCTGTAGCATATGCAAATAGGGCAATGGCCAATATCAAGCTCAGAAGATTCCAAGAGGCTGAGGATGACTGCACAGAGGCCTTAAATCTTGATGATCGTTACATAAAAGCATACTCACGAAGAGCAACAGCTAGAAAAGAACTTGGAAAAATTAAAGAATCAATGGACGATGCTGAATTTGCCTTGAGGTTGGAACCAAACAATCAAGAAATCAAGAAACAGTATGCTGATGCTAAGTCTTTCTATGAGAAAGATATTCTTCAGAAAGCATCAGGGGTTCTGAGAAGCACTGTACAGGGAACTCAAAAAGTGGGGAAGTCAGAGGAAAAAGTTAATGGAGACAGCATCCACCCCATTTCACGTAGTACTCAAAAGTCTGGACTAGCTGAAGTTCATCATCATAAAAAGGATAATGAACGGAAAATACTTGTTAAAGAATCACTCTTAACAGAGGATGTTGATAGCAGAGAAATAAAAGCCAGAAGCAGGCCTCAATCACAAGGAGATGATGGCTCTAAGGGAGGTTTGAGTGCAAGCAACAGTTTGGAGCAGAGAAATCACAGAATTACCAAGCCAGAAATGAAAGCTTCTGTTGAACAGCTTGCTTCTCGCGCTGCTTCTAGAGCCATGTCTGAAGCTGCCAAAAACGTAACACCTCCAACTACAGCTTATCAGTTTGAGGTCTCCTGGAGAGCATTTTCAGGTGATCTTGCTCTGCAGGCTCGTCTATTAAAGGCTATATCTCCCCATTAA 2142 0.4076 MVELAKESTTMRRVLDPMFVYFDSRQHWAPQKGLAMIILSRMAYFMENSGNQRLILASVIHHLDHKNVMNDPQLKTCVIQVATSLAMQIRSESGLAEIGFVGVLCRHLRKSLQASSEFVGEQELNLNISLQNSIDDCLLEIANGVIDAQPLFDLMAINLENIPSGVVGRATIGSLIILARAVTLALSHLHSQQGFPEALLVQLLKVMLHSDEEARVGAHLIFSILLFPSSFHTNEISSLRSRYLGQHNKRHSHAPSVSASASITALLEKLRRNRNTKAENHVNIVHDQERDIVAEDWKQGCGLKNSPNFYKLTSIIDKATGSPSLTDTEPYVMKLTEDQMAQLLSAFWIQANLPDNLPSNIEAVAHSFILTLIVLRIKVSSSRITGSVGVKKASKGDTIFFYNARNSPGQYDLSRINHLHSSFVPEDVPDAASEKDLGNEFFKQKKFKEARDCYSRSIALSPTAVAYANRAMANIKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKIKESMDDAEFALRLEPNNQEIKKQYADAKSFYEKDILQKASGVLRSTVQGTQKVGKSEEKVNGDSIHPISRSTQKSGLAEVHHHKKDNERKILVKESLLTEDVDSREIKARSRPQSQGDDGSKGGLSASNSLEQRNHRITKPEMKASVEQLASRAASRAMSEAAKNVTPPTTAYQFEVSWRAFSGDLALQARLLKAISPH* 714
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g1991 713 MobiDBLite consensus disorder prediction 618 658 - -
Gso6g1991 713 ProSiteProfiles TPR repeat profile. 431 464 IPR019734 GO:0005515
Gso6g1991 713 SUPERFAMILY TPR-like 427 542 IPR011990 GO:0005515
Gso6g1991 713 MobiDBLite consensus disorder prediction 630 648 - -
Gso6g1991 713 ProSiteProfiles TPR repeat profile. 498 531 IPR019734 GO:0005515
Gso6g1991 713 Pfam Tetratricopeptide repeat 466 494 IPR019734 GO:0005515
Gso6g1991 713 Gene3D Tetratricopeptide repeat domain 423 529 IPR011990 GO:0005515
Gso6g1991 713 SMART tpr_5 498 531 IPR019734 GO:0005515
Gso6g1991 713 SMART tpr_5 431 464 IPR019734 GO:0005515
Gso6g1991 713 SMART tpr_5 465 497 IPR019734 GO:0005515
Gso6g1991 713 MobiDBLite consensus disorder prediction 560 603 - -
Gso6g1991 713 PANTHER PUTATIVE, EXPRESSED-RELATED 1 683 - -
Gso6g1991 713 PANTHER PUTATIVE, EXPRESSED-RELATED 1 683 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g1991 Gso-Chr6 35199687 35208124 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g1991 435 501 U-box Gene Family AT3G07370 39.706 2.99e-08 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g1991 K21842 - gmx:100787266 1370.14