Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g1990 ATGGCTCCAAGGGATATCAATAGATCCAACGTTGTTGTTGTTGCCGGAATATCCAACCCGGCCCATAAAGAGATCCGTTACCGCGGCGTGAGGAAGCGGCCGTGGGGCCGCTACGCCGCCGAGATCCGCGACCCAGGCAAGAAGACACGCGTGTGGCTAGGAACGTTTGATACGGCGGAGGAGGCGGCGCGTGCGTATGACACGGCGGCGCGTGAGTTCCGCGGCACGAAGGCGAAGACCAATTTCCCCACCCACGCGGCGGCGGCGCGTAGTCCCAGCCAGAGCAGCACGCTGGACTCCTCGTCTCCGCCGCCGCTGGACCTTACTCTTGCCGCCCCACTCGCCGCCGCGGGCGCGTTGGTGTTCCCGGTGGCGCGTCCCGTGGTGTTCTTCGACGCGTTTGCGCGTGCCGAGGTGCGCGCGTCGTTCGATCTTCCCGTGGCGGCGTTCAGCGACTCGGACTCGTCCTCGGTCGTGGACTACGAGCGGGTCCCACATCGGAAAGTGTTGGATCTTGACCTTAATGTCCCTCCTCCGCCCGAGGTTGCCTGA 552 0.6504 MAPRDINRSNVVVVAGISNPAHKEIRYRGVRKRPWGRYAAEIRDPGKKTRVWLGTFDTAEEAARAYDTAAREFRGTKAKTNFPTHAAAARSPSQSSTLDSSSPPPLDLTLAAPLAAAGALVFPVARPVVFFDAFARAEVRASFDLPVAAFSDSDSSSVVDYERVPHRKVLDLDLNVPPPPEVA* 184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g1990 183 ProSiteProfiles AP2/ERF domain profile. 26 83 IPR001471 GO:0003700|GO:0006355
Gso6g1990 183 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 19 173 - -
Gso6g1990 183 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 4 19 173 - -
Gso6g1990 183 SUPERFAMILY DNA-binding domain 26 84 IPR016177 GO:0003677
Gso6g1990 183 CDD AP2 26 85 IPR001471 GO:0003700|GO:0006355
Gso6g1990 183 Pfam AP2 domain 26 75 IPR001471 GO:0003700|GO:0006355
Gso6g1990 183 MobiDBLite consensus disorder prediction 86 104 - -
Gso6g1990 183 SMART rav1_2 26 89 IPR001471 GO:0003700|GO:0006355
Gso6g1990 183 Gene3D AP2/ERF domain 25 85 IPR036955 GO:0003700|GO:0006355
Gso6g1990 183 MobiDBLite consensus disorder prediction 77 104 - -
Gso6g1990 183 PRINTS Ethylene responsive element binding protein signature 27 38 IPR001471 GO:0003700|GO:0006355
Gso6g1990 183 PRINTS Ethylene responsive element binding protein signature 49 65 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g1990 Gso-Chr6 35017632 35018496 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g1990 18 139 AP2-EREBP Transcription Factor Family AT3G15210 58.940 8.84e-49 156
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gso6g1990 AP2 5.3e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g1990 K09286 - gmx:100786709 283.493
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g0964 12 11660243 11661268 Gso6g1990 6 35017632 35018496 ECH
Gso6g1990 6 35017632 35018496 Gso15g0661 15 5933616 5934726 ECH
Gso6g1990 6 35017632 35018496 Gso6g1990 6 35017632 35018496 ECH