Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g1986 ATGGATAACTACTACCATCAACACCACCACCCTCACTTTGACAACAGCAATAACAATGAACCACATTTACCTCCTGGCTTCAGATTCCACCCCACAGATGAGGAACTCATCACATACTACCTCCTCAAGAAGGTTCTAGATAGCTCCTTCACTGGCCGAGCCATAGTTGAAGTCGACCTCAACAAGTGTGAGCCATGGGAGCTTCCTGAGAAAGCAAAGATGGGTGAGAAGGAATGGTACTTCTATAGCCTTCGTGACCGAAAGTACCCAACTGGATTACGCACCAATAGGGCCACCGAAGCTGGTTATTGGAAAGCCACTGGAAAAGACAGAGAGATCTACAGCTCCAAAACTTGCTCGCTCGTTGGCATGAAGAAAACCTTGGTTTTTTATAGAGGAAGAGCTCCGAAGGGTGAAAAAAGCAACTGGGTCATGCACGAGTATCGCTTAGAAGGCAAATTCGCTTACCACTATCTCTCTAGAAGCTCCAAGGATGAGTGGGTGATCTCACGTGTGTTTCAGAAGAACACCACCGGCGGCGGCTCCACCGTGTCCGCCGCCGCCGCCGCCACCAGCGGTGGTAGTTCCAAGAAAACAAGAATGACCACATCAAACACTAGCAGCAACATGAGCCTGTGCCCCGAACCGGGTTCACCCTCTTCCATTTACCTTCCGCCGCTTCTGGAATCCTCTCCTTACGCCGCCGCCAGCACCACCACCGCCACCCCCGCCGCGGCAGCATTCAACGATCACGAAAGCTGCTCCTTCAACAGCGCCGTCAGCAACAACAACCAAAGGGAGCACGTGTCCTGTTTCTCCACCATCTCCGCCGCCGCCTTCGACCACCTCGTACCCCCACCGGAGCCGCCGCTTGACCCTTTCGCGCGCTTTCATTGTAACAACAACAACGTTGGTGTTGGAGTCTCTACCTTCCCGTGCCTCAGATCCTTGCACGACAACCTTAACTTGCCCTTCTTTTTCTCTCCAATGGGCCACGTCAGCAGTGCTGATGTGGCATCGTTTGGCGCCGTCACAAACTGGCCGGCGCCAGAAGAGCAGAGGATGGCTGACGGTGGTTCCGGCATGGGGATTGTACCGTCCGAGTTGGATTGCATGTGGGGCTATTGA 1128 0.5363 MDNYYHQHHHPHFDNSNNNEPHLPPGFRFHPTDEELITYYLLKKVLDSSFTGRAIVEVDLNKCEPWELPEKAKMGEKEWYFYSLRDRKYPTGLRTNRATEAGYWKATGKDREIYSSKTCSLVGMKKTLVFYRGRAPKGEKSNWVMHEYRLEGKFAYHYLSRSSKDEWVISRVFQKNTTGGGSTVSAAAAATSGGSSKKTRMTTSNTSSNMSLCPEPGSPSSIYLPPLLESSPYAAASTTTATPAAAAFNDHESCSFNSAVSNNNQREHVSCFSTISAAAFDHLVPPPEPPLDPFARFHCNNNNVGVGVSTFPCLRSLHDNLNLPFFFSPMGHVSSADVASFGAVTNWPAPEEQRMADGGSGMGIVPSELDCMWGY* 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g1986 375 Gene3D NAC domain 32 179 IPR036093 GO:0003677|GO:0006355
Gso6g1986 375 SUPERFAMILY NAC domain 16 175 IPR036093 GO:0003677|GO:0006355
Gso6g1986 375 Pfam No apical meristem (NAM) protein 24 150 IPR003441 GO:0003677|GO:0006355
Gso6g1986 375 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 14 371 - -
Gso6g1986 375 MobiDBLite consensus disorder prediction 1 16 - -
Gso6g1986 375 MobiDBLite consensus disorder prediction 1 27 - -
Gso6g1986 375 ProSiteProfiles NAC domain profile. 23 175 IPR003441 GO:0003677|GO:0006355
Gso6g1986 375 MobiDBLite consensus disorder prediction 181 216 - -
Gso6g1986 375 MobiDBLite consensus disorder prediction 181 217 - -
Gso6g1986 375 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-LIKE 14 371 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g1986 Gso-Chr6 34905481 34908104 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g1986 12 375 NAC Transcription Factor Family AT5G53950 51.662 1.30e-116 342
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Gso6g1986 NAM 4.1e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g1986 - - gmx:100788671 723.005
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso6g1986 6 34905481 34908104 Gso6g1986 6 34905481 34908104 ECH
Gso12g1339 12 32493330 32496069 Gso6g1986 6 34905481 34908104 GST