Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g1979 ATGGGTCGTCCACCCAGTAATGGGGGCCCAGCCTTTCGCTTCACCCAGCCTGAGGTATCAGAAATGGAAGCTATTCTTCAAGAACATAACAATGCTATGCCGTCACGTGATGTTCTTACAGCTCTTGCAGAGAAATTCAGTGAATCACAAGATCGTAAAGGCAAGATTTCAGTGCAGATGAAGCAAGTTTGGAATTGGTTTCAAAATAAGCGATATGCGATAAGAGCAAAATCAAGTAAGACTCCTGGGAAGTTAAATATTACACCCATGCCTCGGGATGATTACAATTCAACCCCAATAAGGAGTATGCCTCAACAACCAACAGCTGCTTCAATTCCTGCTGCTTCTGCTACAGTTCCAACAGCAGTAAAGGCAACTACAGAAAATTCAGTTATGGAATTTGAAGCTAAATCTGGAAGGGATGGAGCATGGTATGATGTGGCTACCTTTCTATCACACAGATATTTGGAAACCAGTGATCCGGAAGTGCTGGTACGATTTGCTGGTTTTGGACCTGAGGAAGATGAGTGGATTAACATTCGAAAGCATGTTAGGCCACGCTCATTGCCTTGTGAATCATCAGAATGTGTTGTAGTCATCCCTGGTGATCTCATACTTTGTTTTCAGGAAGGTAAGGAGCAAGCCCTATACTTTGATGCCCATGTCCTTGATGCTCAAAGGAGAAGGCATGATGTACGAGGCTGTCGCTGTAGATTTCTAGTTCGTTATGATCATGATCAGTCAGAGGAAATTGTGCCGCTTAGGAAGATTTGTCGCCGGCCCGAAACCGATTATCGGTTACAGCAACTTCATGCTGTGAATGAGGCAGCACCTGTGGATCAGCAGAAGACTGACATGGATCCAGCAGCAAATGTTAATGCCGTGAGGGCTACTACTACTGAAACAGTGCCAAAGCAGCTGATTGCAGCAAACATTCATATGGAGACGACGCCAGTTCCAGTTGTGCAAACAAATGTTCCTCAACAACCTCCACAAAGTATGGATATGGATGTGGATCAAAAGAAAGCTGAAACAATTGCTGATGTTCAAGCTGGAAATTCCATCATCACCCCAGGCAGTGTTGTTACTAACATCATTACTACAAGCAGTGTTCCTGAAGTCTTTAGTCAGACTCAGAACATGGTTGAATAA 1152 0.4401 MGRPPSNGGPAFRFTQPEVSEMEAILQEHNNAMPSRDVLTALAEKFSESQDRKGKISVQMKQVWNWFQNKRYAIRAKSSKTPGKLNITPMPRDDYNSTPIRSMPQQPTAASIPAASATVPTAVKATTENSVMEFEAKSGRDGAWYDVATFLSHRYLETSDPEVLVRFAGFGPEEDEWINIRKHVRPRSLPCESSECVVVIPGDLILCFQEGKEQALYFDAHVLDAQRRRHDVRGCRCRFLVRYDHDQSEEIVPLRKICRRPETDYRLQQLHAVNEAAPVDQQKTDMDPAANVNAVRATTTETVPKQLIAANIHMETTPVPVVQTNVPQQPPQSMDMDVDQKKAETIADVQAGNSIITPGSVVTNIITTSSVPEVFSQTQNMVE* 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g1979 383 Gene3D - 10 84 - -
Gso6g1979 383 PANTHER PROTEIN SAWADEE HOMEODOMAIN HOMOLOG 2 1 351 - -
Gso6g1979 383 CDD homeodomain 13 75 IPR001356 GO:0003677
Gso6g1979 383 Gene3D - 129 190 - -
Gso6g1979 383 Gene3D - 191 263 - -
Gso6g1979 383 Pfam SAWADEE domain 132 258 IPR032001 GO:0003682
Gso6g1979 383 SUPERFAMILY Homeodomain-like 4 76 IPR009057 -
Gso6g1979 383 PANTHER PROTEIN SAWADEE HOMEODOMAIN HOMOLOG 2 1 351 IPR039276 -
Gso6g1979 383 SMART HOX_1 7 81 IPR001356 GO:0003677
Gso6g1979 383 ProSiteProfiles 'Homeobox' domain profile. 13 77 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g1979 Gso-Chr6 34642348 34653900 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Gso6g1979 SAWADEE 6.7e-40 CL0049
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g1979 - - gmx:100783895 717.227