Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g1974 ATGAGTCAACAAGTCTATTTTCACTCCGAAAGTATCCATTTCAGTGGCACCAACATCCGTCTAGCTTCAGGAAATGGAATTAGTCTGGATTGCCATTATGTACTAGATGCTCATGACAGCTATTTGGATCAGCACTTACAACCATATGTACAAGGTCATGCTTTGCCTTGGCATCTGTCTCTTCCAATGCCATATGTAGAAGCTTTCAGCGCTAATAGAAGTTCATCAGAGAATGCGAGAATTGGTCCACAGATATATCATCATTATCATGACACAAATGGCATCAGAAGTGGCCATAGATTTCCACGGAGATATCATGACACAAATGGCAGCAGAAGTGGCCATAGATTTCCATATAGATATCATGATACAAATGGCAGCAGAAGTGGCCACAGATTTCCACGGAGATATCATAACACAAATGGCAGCAGAAGTGGCCACAGATTTCCACAGAGATATCATGATACAACTGGCAGCAGAAGTGGCCAAAGATTTCCCCATCATCCTCCACAGCACCATAGCTTTCATCATCAAGTACAGCCAGCACAAGTAATCAGAGGCCACTCCTTCAACATTCATCCTCCTGTAACTGCACCTTCATATAGACTTCCAACAAATCCTTCACGTAATTCTTCAATCCTCATACATGATGCTTTTGAGATGGGCGCCAGGCATCCTGGCTTTGCACCATTTGCAGGTGCACGCATACACCAGTCTCATAGAGGCAACTTGCACGAGATGATAACTCTTATACATCAAAATCTTCCTCCTGCGGTCTTTTTCTCAGATGATGATGCTTCTTTACTGGTTGACCATCATACTGATATGTACTTGGACACTGAAGATATGTCTTATGAGGACCTTCTTGAATTAGGTGAGCAGATTGGCAACGCAAAATCAGGTTTATCAGAGAAAACAATTACAAGTCAAATGAAGACCAAAACTTACATACTACCTACTAATGCTACTAACTTGGAGGAGGCAGCTTCTGAGGAACAGGGAACTGATCTTTGCATAATATGCCAGGATGAATATAAGAACAAAGAGAATATTGGAATTCTTAGATGCGGGCACGAATATCACGCAGATTGTTTAAGGAGATGGTTACTTGAGAAAAATGTCTGCCCCATGTGCAAATCAGTAGCATTGACTCCTGGAGAAAAACAATGA 1170 0.4179 MSQQVYFHSESIHFSGTNIRLASGNGISLDCHYVLDAHDSYLDQHLQPYVQGHALPWHLSLPMPYVEAFSANRSSSENARIGPQIYHHYHDTNGIRSGHRFPRRYHDTNGSRSGHRFPYRYHDTNGSRSGHRFPRRYHNTNGSRSGHRFPQRYHDTTGSRSGQRFPHHPPQHHSFHHQVQPAQVIRGHSFNIHPPVTAPSYRLPTNPSRNSSILIHDAFEMGARHPGFAPFAGARIHQSHRGNLHEMITLIHQNLPPAVFFSDDDASLLVDHHTDMYLDTEDMSYEDLLELGEQIGNAKSGLSEKTITSQMKTKTYILPTNATNLEEAASEEQGTDLCIICQDEYKNKENIGILRCGHEYHADCLRRWLLEKNVCPMCKSVALTPGEKQ* 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g1974 389 MobiDBLite consensus disorder prediction 107 174 - -
Gso6g1974 389 MobiDBLite consensus disorder prediction 107 130 - -
Gso6g1974 389 Pfam Ring finger domain 337 379 IPR001841 -
Gso6g1974 389 SMART ring_2 338 378 IPR001841 -
Gso6g1974 389 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 297 383 IPR013083 -
Gso6g1974 389 SUPERFAMILY RING/U-box 337 383 - -
Gso6g1974 389 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 139 386 IPR045191 GO:0061630
Gso6g1974 389 ProSiteProfiles Zinc finger RING-type profile. 338 379 IPR001841 -
Gso6g1974 389 PANTHER ZINC FINGER, C3HC4 TYPE (RING FINGER) PROTEIN 139 386 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g1974 Gso-Chr6 34281319 34285203 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g1974 271 383 C3H Transcription Factor Family AT2G15530 43.363 5.92e-29 117
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g1974 K19041 - gmx:100780488 682.174