Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g1971 ATGAGTCAACAAGTCTATTTTCACTCCGAAAGTATCCATTTCAGTGGCACCAACATTTGTCTAGCTTCAGGAAATGGAATTAGTCTAGATTGCCATTATGTACTAGATGTTCATGACAGCCATTTGGATCAGCACTTACAACCATATGTACAAGCTTTCAGCGCTAATAGAAGTTCATCAGAGAATGCGAGAATTGGTCCACAGAGATATCATGACACAAATGGTAGCAGAAGTGGCCACAGATTTCCATGGAGATATCATGACACAAATGGCAGCAGAAGTGGCCATAGATTTCCATATAGATATCATGATACAAATGGCAGCAGAATTGGCCACAGATTTCCACAGAGATATCATGACACAAATGGCAGCAGAAGTGGCCACAGATTTCCACGGAGATATCATGACACAAATGGCAGCAGAAGTGGCCACAGATTTCCACAGAGATATCATGACACAAATGGCAGCAGAAGTGGCCACAGCTTTCCACGGAGATATCATGACACTAATGGCAGCAGAAGTGGCCACAGCTTTCCACAGAGATATCATAATACAACTGGCAGCAGAAGTGGCCACAGATTTCCCCCTCCTCCTCCACAACATCATAGCTTTCATCATCAAGTACAGCCTGCACAAGTGATCATAGGTCACTCCTTCAACATTCATCCTCCTGTAACTGCACCTTCGTATAGACTTCCAACAAATCCTTCACACGGTTCTTCAATCCTCATACATGATGCTTTTGAGATGGGTGCCAGGCATCCTGGCTTTGCACCATTTGCAGGTGCACGCATACACCAGTCTCATAGAGGCAACTTGCACGAGATGATAACTCTTATACATCAAAATCTTCCTCCTGTGGTCTTTTTCTCAGATGATGATGTTGCTTTACTGGTTGACCATCATACTGATATGCACTTGGACACTGAAGATATGTCTTATGAGGACCTTCTTGAATTAGGTGAGCAGATTGGCAATGCAAAATCGGGTTTACCAGAGAAAACAATTACAAGTCAAATGAAGACCAAAACTTATATACTACCTACTAATGCTACTAACTTGGAGGAGGCAGCTTCTGAGGAACAGGAAACTGATCTTTGCATAATATGCCAGGATGAATATAAGAACAAAGAGAATATTGGAATTCTTAGATGCGGGCATGAATATCACGCAGATTGTTTAAGGAGATGGTTACTTGAGAAAAATGTCTGCCCCATGTGCAAATCAATAGCATTGACTCCTGGAGGAAAACAATGA 1257 0.4224 MSQQVYFHSESIHFSGTNICLASGNGISLDCHYVLDVHDSHLDQHLQPYVQAFSANRSSSENARIGPQRYHDTNGSRSGHRFPWRYHDTNGSRSGHRFPYRYHDTNGSRIGHRFPQRYHDTNGSRSGHRFPRRYHDTNGSRSGHRFPQRYHDTNGSRSGHSFPRRYHDTNGSRSGHSFPQRYHNTTGSRSGHRFPPPPPQHHSFHHQVQPAQVIIGHSFNIHPPVTAPSYRLPTNPSHGSSILIHDAFEMGARHPGFAPFAGARIHQSHRGNLHEMITLIHQNLPPVVFFSDDDVALLVDHHTDMHLDTEDMSYEDLLELGEQIGNAKSGLPEKTITSQMKTKTYILPTNATNLEEAASEEQETDLCIICQDEYKNKENIGILRCGHEYHADCLRRWLLEKNVCPMCKSIALTPGGKQ* 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g1971 418 SMART ring_2 367 407 IPR001841 -
Gso6g1971 418 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 137 415 IPR045191 GO:0061630
Gso6g1971 418 PANTHER ZINC FINGER, C3HC4 TYPE (RING FINGER) PROTEIN 137 415 - -
Gso6g1971 418 MobiDBLite consensus disorder prediction 172 191 - -
Gso6g1971 418 Pfam Ring finger domain 366 408 IPR001841 -
Gso6g1971 418 MobiDBLite consensus disorder prediction 106 151 - -
Gso6g1971 418 ProSiteProfiles Zinc finger RING-type profile. 367 408 IPR001841 -
Gso6g1971 418 SUPERFAMILY RING/U-box 361 412 - -
Gso6g1971 418 MobiDBLite consensus disorder prediction 57 73 - -
Gso6g1971 418 MobiDBLite consensus disorder prediction 57 88 - -
Gso6g1971 418 MobiDBLite consensus disorder prediction 106 204 - -
Gso6g1971 418 MobiDBLite consensus disorder prediction 74 88 - -
Gso6g1971 418 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 328 411 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g1971 Gso-Chr6 34226945 34231055 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g1971 300 412 C3H Transcription Factor Family AT2G15530 42.478 2.87e-28 115
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g1971 K19041 - gmx:100780488 877.47