Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g1970 ATGGATCAAATGAGTCAGCAAAGGCATGGCTATTTTCATTCCGAAAGTATCCATTTCAGAGGCAGCAACATCTCTCCGCCTAATGTATGCACACTCGTGACAGCCTCAGGGCACGGAACTAATCTAGATTCCCATTATTTACTAGATGCTTATGACAATGGTATGATGTATGGAATGACACAATACAATGGAGTTCAACATCAACATAATCTTGATATGGGTGTTCCAGCTGCTGCCAACATATATTATTCTAGCATGAATCCTTCATCTGGTCCAGCTGCATCTCTAAATGCTGAAGTTAGGAGAGGAAATTATCAATATTTCAATGCCTCGGCTAGTTCTACAGTTGCTCCCCCTAACGCAAGACACACTGAAAATGGCATCCCCTCACTACCACATTGTACTTCGTGGAGCAGATCAGGCGAGTCTATGATGGTGCGTGACCCTAACCGTATAACTCAAGGAAATTATTTAAGTCAACACTTTCAACCAGCAGCTCCTCCTCCCTGGCTGGACCAGCAGTTGAATAGCAATAATAATGATGGTCATGCTTTGCCTTGGCATCAGTCTCTTCCAATGCCATATGTACAAGCTCCCAGTGCTAATGGAAGTTCATTAGAGAATGCAAGAATGGGTCCTCAGAGATATCATGATACAGCTGGCAGCAGAAGTGGCCACAGATTTCCTCATCCTCCTCTTGTCAACCCACACTATCATAGCTTTCATCATCAAACACAGCCTGTGCAAGAAATGAGAGGTCACTCCATCAACTTTCACCCCCCTCCTCCAGTAACTGCACCTTCATATAGAGTTCCAACAAATGCATCACGAAGTTCTTCGATCTTCATACAAGATGCTATTGAGATGGGTGCTAGGCATGTTGGCGCTGCACCATTTGCTGGTTCACGTATATACCGACCCCATAGGGGCAGCATGCATGAGACTACTCTTAGACATCGAAATCTTCCTCCCGTGACCTTTCTCCAAGTTGATGACGTTACTTTACTGGTTGACCATCATAATGATATGCGCTTGGACATTGAGGATATGTCTTATGAGGAGCTTCTTGCATTAGGGGAGCGGATTGGCAAAGTAAACACAGGTTTGTCAGAGGAAATGATTACAAGTCAAATGAAGACAAAATCTTATTTATTACTAGCTACTAATGCTATTAACTTGGAGGAGGCAGCTTCCGAGGAACAGGAAACTGATTCTTGCATAATATGCCAGGATGAATATAAAAACCAAGAAAAAATTGGTATTCTTCAATGCGGGCACGAATATCACGCAGACTGTTTAAAGAAATGGTTACTTGTGAAAAATGTGTGCCCCGTATGCAAATCAGAAGCATTGACTCCTGGAGAGAAGTGTGTATAA 1377 0.4299 MDQMSQQRHGYFHSESIHFRGSNISPPNVCTLVTASGHGTNLDSHYLLDAYDNGMMYGMTQYNGVQHQHNLDMGVPAAANIYYSSMNPSSGPAASLNAEVRRGNYQYFNASASSTVAPPNARHTENGIPSLPHCTSWSRSGESMMVRDPNRITQGNYLSQHFQPAAPPPWLDQQLNSNNNDGHALPWHQSLPMPYVQAPSANGSSLENARMGPQRYHDTAGSRSGHRFPHPPLVNPHYHSFHHQTQPVQEMRGHSINFHPPPPVTAPSYRVPTNASRSSSIFIQDAIEMGARHVGAAPFAGSRIYRPHRGSMHETTLRHRNLPPVTFLQVDDVTLLVDHHNDMRLDIEDMSYEELLALGERIGKVNTGLSEEMITSQMKTKSYLLLATNAINLEEAASEEQETDSCIICQDEYKNQEKIGILQCGHEYHADCLKKWLLVKNVCPVCKSEALTPGEKCV* 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g1970 458 Pfam Ring finger domain 404 447 IPR001841 -
Gso6g1970 458 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 367 451 IPR013083 -
Gso6g1970 458 SMART ring_2 406 446 IPR001841 -
Gso6g1970 458 ProSiteProfiles Zinc finger RING-type profile. 406 447 IPR001841 -
Gso6g1970 458 PANTHER ZINC FINGER, C3HC4 TYPE (RING FINGER) PROTEIN 84 455 - -
Gso6g1970 458 SUPERFAMILY RING/U-box 405 451 - -
Gso6g1970 458 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 84 455 IPR045191 GO:0061630
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g1970 Gso-Chr6 34211606 34218311 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g1970 333 451 C3H Transcription Factor Family AT2G15530 49.580 2.46e-36 140
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g1970 K19041 - gmx:100779069 959.133
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso6g1970 6 34211606 34218311 Gso6g1970 6 34211606 34218311 ECH