Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g1967 ATGCATGTAATTATACATGGGAACATTGCAGCTAATGAGAGTTCAGATGATAAGGGTATAATAGGAGCTATTTTAGATAAGAGTTCTCGCATTGGCCAAGAGCATGCAGTGGCTATGAAGCTGGCATTGGAAGATTTTTATCAAAAAAGCATTCAGAGTTTTTCTCTGCATATAAGAAACTCTCAAGGGGATCCTCTTTTGGCAGCTATTGCAGCTAAAGATCTCATTGATAATCAAAAGGTGCAAGCCATCATTGGACCACAGACATGGGCAGAGACATCTTTAGTGGCTGAAATCAGTAGCCAAAAGAGGATACCTTTCCTTTCTCTAGCAGAAGCAACTCCAGAATGGGCAATGAAGAAGTGGCATTTCCTGCTGCAATCCTCACCTAGCCAAATAATGCAGATGAAAGCTATTGCTGAAATTGTAAAGTCTTGGAAACTCTATAATATTACTATGATATATGAAGATGGAGACTCATCATCCACTAAAATTTTATCTCAACTCTCTGAAGCTCTTACAAAATTTGGGACAGAATTAAGCAATGCTATAGCAATCCCACCTCTAGTTTCTTCTTCATTGTCCCAACAACTTGAGAAACTAAGAGAAGGACAATGTAGAGTCATTATTGTCCATTTATCCTTTCCTTTGGCACTAAACCTCTTTGAAACTGCAAAAAGAATGAATATTATGGGGGAAGGTAATGTATGGATTACTACTGGTTCCTTTACAAGCCTTGTTCATTCCTTGAATGCATCCACTATCTCCAATATGCAAGGGGTTATTGGAGTCAAGAGCTATATCCCAAAACTATTTCCCCAGTATGCTGACTTCTACCGTAGATTTCGGAAAAAATTTAGCTCGGAGAATTTTGAAGAGTTTAATTATGAGCCTGGGATCTTTGCAGCCGAAGCTTATGATGCTGCAAGGATTGTGGTTGATGCAATGAGGGAAACCAACCAAATAGGGGGTCAACTTTTGCTAGATAAGATTATGCTTAATGAAAAGGCTTCTTATAGTTCTTCGGTGAAGGAATTAGGAAAAGTTGTTAATCCAACATGTGCCATACGACTGAGAATTGGTGTCCCTTCCATGTCAAACGTCAAACAGTATGCCGAAGTTATTCAAGATCTTTCTCAAAATGTTCCTTCCTTCAACTTCAAGGGATTTTCCATATGTCTTTTTGATGAAATAGTAAAAAAATTGCCATACCGTCTGGAATATGATTATTTTGCCTTTAATGGTACATATGATGAGCTGGTGAAGCAAGTTTATTTGAAGAACTATGATGCAGTTGTTGGTGATGTATCGATAGTGTCCACACGTTATGAATATGCTTCATTCACTCAGCCCTATACTGAAACCGGACTGATGATGATTGTTCCTATTAAATCAAAGACAGGTGATAGAACGTGGCTATTCATGAAACCTTTCACAAAGCGCATGTGGATTCTAATATTGTTCATCATTGTCTACAATGGTTTTGTTGTATGGATTATTGAAAGAAACCACCTTTCACAATTTATGAATATTTCTTGTGACCTTCCCATATTGAAAGGTGATAATTATAAGGTTTGGAAGGAAAGAATTCTCCTTCATTTGGGCTGGATGGATATTGACTATGCTATAAAGAAGGATGAGCCACCGGCTATTACTGAAACTAGCAAACTTGATGTTGTTGACCTTTATGAAAGGTGGGAGAGATCTAATCGTCTCTCCGTTATGTTCATAAAAACCAACATATCCGCTAGTATTCGGGGTTCAGTTGACCAGCATGATAAGGTCAGAGATCTATTAAAAGCTATTGATGAACAGTTTACGACCTCTGAGAAGTTGCTTGCTAGCACACTCATTATGCAATTCTCTTCCATTAAGCTTACTGGAACGAGAGGTGTACGTGAACATATCATGCGCTTAAGGGACATAGTGGCTCCGTTGAAAACCTTGGAAGTTACCATGTCTAAATCCATCCTAGGTATGGAAAGCCTAAGGAAGCTAGTGGGAAGTGAGCAGTGCATCTACTCAGGGAGTAGGATGAGCTCGCATTACACTGTGCCTGGTTCTCCGGATCAGAATGGTGTGGCAGAACGAAGAAATCGAAGCTTATTAGACATGAACATTTCTTCTGAAATGGATCACTATGAAGCTAAACCTTCTGGGACAGGTAATAGATTGGTAGTCATCCCCACCCCTCAAGTTAAAATGGGTGTTAGACAACCAGTGATTGAAGTTCCACAAGCTGTTGAAAGTGATCATGTAGATCAAGTTGTTTGTGAGGAACAACATGATAATGTTGAACAAACTGGTGAAGAACCGGTTGAACAAGATCCTCATCAGGATGACCAAGCAGCATTAAGAATATCTACTAGAGTAAAAAGACAGCAATTCCTAGTGATTATGTAG 2403 0.3899 MHVIIHGNIAANESSDDKGIIGAILDKSSRIGQEHAVAMKLALEDFYQKSIQSFSLHIRNSQGDPLLAAIAAKDLIDNQKVQAIIGPQTWAETSLVAEISSQKRIPFLSLAEATPEWAMKKWHFLLQSSPSQIMQMKAIAEIVKSWKLYNITMIYEDGDSSSTKILSQLSEALTKFGTELSNAIAIPPLVSSSLSQQLEKLREGQCRVIIVHLSFPLALNLFETAKRMNIMGEGNVWITTGSFTSLVHSLNASTISNMQGVIGVKSYIPKLFPQYADFYRRFRKKFSSENFEEFNYEPGIFAAEAYDAARIVVDAMRETNQIGGQLLLDKIMLNEKASYSSSVKELGKVVNPTCAIRLRIGVPSMSNVKQYAEVIQDLSQNVPSFNFKGFSICLFDEIVKKLPYRLEYDYFAFNGTYDELVKQVYLKNYDAVVGDVSIVSTRYEYASFTQPYTETGLMMIVPIKSKTGDRTWLFMKPFTKRMWILILFIIVYNGFVVWIIERNHLSQFMNISCDLPILKGDNYKVWKERILLHLGWMDIDYAIKKDEPPAITETSKLDVVDLYERWERSNRLSVMFIKTNISASIRGSVDQHDKVRDLLKAIDEQFTTSEKLLASTLIMQFSSIKLTGTRGVREHIMRLRDIVAPLKTLEVTMSKSILGMESLRKLVGSEQCIYSGSRMSSHYTVPGSPDQNGVAERRNRSLLDMNISSEMDHYEAKPSGTGNRLVVIPTPQVKMGVRQPVIEVPQAVESDHVDQVVCEEQHDNVEQTGEEPVEQDPHQDDQAALRISTRVKRQQFLVIM* 801
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g1967 800 Gene3D - 355 471 - -
Gso6g1967 800 PANTHER GLUTAMATE RECEPTOR 14 343 - -
Gso6g1967 800 PANTHER GLUTAMATE RECEPTOR 339 508 - -
Gso6g1967 800 SUPERFAMILY Periplasmic binding protein-like II 384 488 - -
Gso6g1967 800 Gene3D - 472 540 - -
Gso6g1967 800 Gene3D - 6 332 - -
Gso6g1967 800 SUPERFAMILY Periplasmic binding protein-like I 15 329 IPR028082 -
Gso6g1967 800 SMART GluR_14 357 669 IPR001320 GO:0015276|GO:0016020
Gso6g1967 800 Pfam Receptor family ligand binding region 37 321 IPR001828 -
Gso6g1967 800 Gene3D - 141 282 - -
Gso6g1967 800 Pfam gag-polypeptide of LTR copia-type 566 656 - -
Gso6g1967 800 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 14 343 - -
Gso6g1967 800 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 339 508 - -
Gso6g1967 800 MobiDBLite consensus disorder prediction 762 781 - -
Gso6g1967 800 Pfam Bacterial extracellular solute-binding proteins, family 3 386 466 IPR001638 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g1967 Gso-Chr6 34132375 34143883 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g1967 21 508 Ion Channels AT3G51480 25.342 4.58e-48 182
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g1967 - - gsj:114416129 1551.18
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso6g1967 6 34132375 34143883 Gso6g1967 6 34132375 34143883 ECH