Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g1966 ATGCACAAGTTTGCTTTTCTGCTTTGGTTTATCAGCATGCATGTAATTATACATGGGAACATTGCAGCTAATGAGAGTTCAGATGATAAGGGCATAATAGGAGCTATTTTAGATAAGAGTTCTCGCATTGGCCAAGAGCATGCAGTGGCTATGAAGCTGGCATTGGAAGATTTTTATCAAAAAAGCATTCAGAGTTTTTCTCTGCATATAAGAAACTCTCAAGGGGATCCTCTTTTGGCAGCTATTGCAGCTAAAGATCTCATTGATAATCAAAAGGTGCAAGCCATCATTGGACCACAGACATGGGCAGAGACATCTTTAGTGGCTGAAATCAGTAGCCAAAAGAGGATACCTTTCCTTTCTCTAGCAGAAGCAACTCCAGAATGGGCAATGAAGAAGTGGCATTTCCTGCTGCAATCCTCACCTAGCCAAATAATGCAGATGAAAGCTATTGCTGAAATTGTAAAGTCTTGGAAACTCTATAATATTACTATGATATATGAAGATGGAGACTCATCATCCACTAAAATTTTATCTCAACTCTCTGAAGCTCTTACAAAATTTGGGACAGAATTAAGCAATGCTATAGCAATCCCACCTCTAGTTTCTTCTTCATTGTCCCAACAACTTGAGAAACTAAGAGAAGGACAATGTAGAGTCATTATTGTCCATTTATCCTTTCCTTTGGCACTAAACCTCTTTGAAACTGCAAAAAGAATGAATATTATGGGGGAAGGTAATGTATGGATTACTACTGGTTCCTTTACAAGCCTTGTTCATTCCTTGAATGCATCCACTATCTCCAATATGCAAGGGGTTATTGGAGTCAAGAGCTATATCCCAAAACTATTTCCCCAGTATGCTGACTTCTACCGTAGATTTCGGAAAAAATTTAGCTCGGAGAATTTTGAAGAGTTTAATTATGAGCCTGGGATCTTTGCAGCCGAAGCTTATGATGCTGCAAGGATTGTGGTTGATGCAATGAGGGAAACCAACCAAATAGGGGGTCAACTTTTGCTAGATAAGATTATGCTTAGTAATTTTACTGGCTTAAGTGGAAAAATTCAGTTTACTAAACATGGAAGAGCTCCGGCACATACTTTTAAAATCATTAATTTGATAGGGAGGAGCTACAGGGAAATTGGTTTCTGGTCAGATGGACTTGGTTTCTCAAAATATTTAGATGAAAAGGCTTCTTATAGTTCTTCGGTGAAGGAATTAGGAAAAGTTGTTAATCCAACATGTGCCATACGACTGAGAATTGGTGTCCCTTCCATGTCAAACGTCAAACAGTATGCCGAAGTTATTCAAGATCTTTCTCAAAATGTTCCTTCCTTCAACTTCAAGGGATTTTCCATATGTCTTTTTGATGAAATAGTAAAAAAATTGCCATACCGTCTGGAATATGATTATTTTGCCTTTAATGGTACATATGATGAGCTGGTGAAGCAAGTTTATTTGAAGAACTATGATGCAGTTGTTGGTGATGTATCGATAGTGTCCACACGTTATGAATATGCTTCATTCACTCAGCCCTATACTGAAACCGGACTGATGATGATTGTTCCTATTAAATCAAAGACAGGTGATAGAACGTGGCTATTCATGAAACCTTTCACAAAGCGCATGTGGATTCTAATATTGTTCATCATTGTCTACAATGGTTTTGTTGTATGGATTATTGAAAGAAACCACCGCCCTGAACCGGAGGGGCCTATTCTGCAGCAAACCACAACTATGTTATTGTTGGCTTTCTGTTCTTTGTTCTCTTTGAATGGGGACAGATTGCATAGCAATTTATCAAGGGTGGCAATGGTTGTATGGTTTTTGGTGGCTCTAATCATTTCACAGATTTACACTGCTAGCCTTGCCAGCATGTTGACTGTTGAACGGTCTGAACCAACTGTAGACAGCATTCAGCAGCTAAAGAACAACAATGCCATTGTAGGATGTGATAGAGGATCCTACTTGCAAAGATATCTGCAGGATGCATTGGGCATCAATGCCAATAAAATCAAGCCATTTAACTCTATGGAGAGCCTTGCCTATGCGCTAAGAAACAAAGAAATAGCAGCTGTCTTCCTTGATGTTCCGCAGGCAAAAATTTTCCTTGCAAAGCACTGCAAAGGGTTTGTTCAAGCAATGCCTACATACAAAATTGGAGGATATGGATTTGTATTTCCAAGGGGATCTCCATTGCTTCATAGTGTAAACCAAGCCCTATTGAACATATCTGAAAGTGGCACACTACGTGATCTAGAAAACAGAATGCTTGCATCAGAGAAATGTATAGACATAATTGACCCAGATGCAAAATATACTAGTCTCAGCCCTACCAGCTTCATGGTGCCCTTCTTCTTAACTGGGGGCACTTCAACAATTGCACTCTTAATTTACATATTTTCGGCGAATTATTTATGTCATGGACAGAGAACAATGTGGGGACTAATGATGGCTGTAATTAAACGTTGA 2472 0.39 MHKFAFLLWFISMHVIIHGNIAANESSDDKGIIGAILDKSSRIGQEHAVAMKLALEDFYQKSIQSFSLHIRNSQGDPLLAAIAAKDLIDNQKVQAIIGPQTWAETSLVAEISSQKRIPFLSLAEATPEWAMKKWHFLLQSSPSQIMQMKAIAEIVKSWKLYNITMIYEDGDSSSTKILSQLSEALTKFGTELSNAIAIPPLVSSSLSQQLEKLREGQCRVIIVHLSFPLALNLFETAKRMNIMGEGNVWITTGSFTSLVHSLNASTISNMQGVIGVKSYIPKLFPQYADFYRRFRKKFSSENFEEFNYEPGIFAAEAYDAARIVVDAMRETNQIGGQLLLDKIMLSNFTGLSGKIQFTKHGRAPAHTFKIINLIGRSYREIGFWSDGLGFSKYLDEKASYSSSVKELGKVVNPTCAIRLRIGVPSMSNVKQYAEVIQDLSQNVPSFNFKGFSICLFDEIVKKLPYRLEYDYFAFNGTYDELVKQVYLKNYDAVVGDVSIVSTRYEYASFTQPYTETGLMMIVPIKSKTGDRTWLFMKPFTKRMWILILFIIVYNGFVVWIIERNHRPEPEGPILQQTTTMLLLAFCSLFSLNGDRLHSNLSRVAMVVWFLVALIISQIYTASLASMLTVERSEPTVDSIQQLKNNNAIVGCDRGSYLQRYLQDALGINANKIKPFNSMESLAYALRNKEIAAVFLDVPQAKIFLAKHCKGFVQAMPTYKIGGYGFVFPRGSPLLHSVNQALLNISESGTLRDLENRMLASEKCIDIIDPDAKYTSLSPTSFMVPFFLTGGTSTIALLIYIFSANYLCHGQRTMWGLMMAVIKR* 824
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g1966 823 Pfam Receptor family ligand binding region 49 374 IPR001828 -
Gso6g1966 823 Gene3D - 143 385 - -
Gso6g1966 823 SMART GluR_14 418 760 IPR001320 GO:0015276|GO:0016020
Gso6g1966 823 Pfam Bacterial extracellular solute-binding proteins, family 3 447 756 IPR001638 -
Gso6g1966 823 CDD PBP1_GABAb_receptor_plant 33 394 IPR044440 -
Gso6g1966 823 Gene3D - 39 365 - -
Gso6g1966 823 PIRSF IGluLR_plant 1 813 IPR017103 -
Gso6g1966 823 PANTHER GLUTAMATE RECEPTOR 23 822 - -
Gso6g1966 823 SUPERFAMILY Periplasmic binding protein-like I 27 386 IPR028082 -
Gso6g1966 823 Gene3D - 674 765 - -
Gso6g1966 823 Gene3D - 416 532 - -
Gso6g1966 823 SUPERFAMILY Periplasmic binding protein-like II 445 756 - -
Gso6g1966 823 Pfam Ligand-gated ion channel 757 788 IPR001320 GO:0015276|GO:0016020
Gso6g1966 823 CDD GluR_Plant 418 758 - -
Gso6g1966 823 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 23 822 - -
Gso6g1966 823 Gene3D - 533 662 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g1966 Gso-Chr6 34116705 34120977 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g1966 6 814 Ion Channels AT2G29120 30.491 2.04e-122 390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g1966 - - gmx:100820229 1602.03
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso6g1966 6 34116705 34120977 Gso6g1966 6 34116705 34120977 ECH