Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g1965 ATGCATGTAATTATACATGGGAACACTGCAGATAATGAGAGTTCAGATGTTAAGGGCATAATAGGAGCTATTTTAGATAGCAGTTCTCGCATTGGCCAAGAGCATGCAGTGGCTATAAATCTGGCATTGGAGGACTTTCATCAAAAAAACAATCTGAGTTTTGCTCTGCATGTAAGAAACTCTCAAGGAGATCCTCTTTTGGCAGCTACCGCAGCTAGAGATCTCATCGATAATCAAAAGGTGCAAGCCATCATTGGACCACAAACATGGGCAGAGACATCTTTAGTTGCTGAAGTTTGTACCCAAAAGAGCATACCTTTCCTTTCTCTAGCGGATGCAACTCCAGAATGGGCAATGAAGAAGTGGCCCTTCCTGCTGCAATCCTCTCCTAGGCAAATTATGCAGATGAAAGCTATTGCTGAAATTGTAAAGTCTTGGAAACTCTATAATGTCAGCATGATATATGAAGATGGAGACTCGTCATCCACTGAAGTTTTATCTCGGCTCTCTGAAGCTCTTACATCAGTTGGCACAGAATTAAGCAATGTTCTAACAGTTCCACCTCTAGTTTCTTCTTCATTGTCTCAACAACTTGAGAAGCTAAGAGAAGGACAATGCAGAGTCCTTATTGTCCATTTGTCCTTTCCTTTGGCACTACACCTGTTTGAAACTGCAAAAAGAATGGATATGATGGGGGAAGGTAATGTATGGATTACTACTGGTACCTTTACAAGCCTTGTTCATTCCTTGAATGCATCCACTATCTCCAATATGCAAGGGGTTATTGGAGTCAAGAGCTATATCCCAAAACTATGGCACCAGTATGGAAACTTCTACCATAGATTTCGGAAAAAATTTAGCTCGGAGAATTTTGAAGAGTTTAATTATGAGCCTGGAATCTTTGCCACCGAAGCTTATGATGCTGCAACGATTGTGGTTGATTCAATGAGGAAAACCAACAAAAAAGGGGGTCAATTTTTGCTGGATAAGATTTTACGTAGTAATTTTACTGGCTTAAGTGGACAAATTCAGTTCAATGGACATGAAAGAGCTCCAAAACATACTTTTCAAATCATTAATGTGATTGGGAGTAGCTACAGGGAAATTGGGTTCTGGTCAGATGGACTTGGTTTCTCAAAATCTTTGGATCCTAATGCTTCTTACAGTTCTTCAGTGAAGGAATTAGGAAAGGTAGTTAATCCAACATGTGACATACGACTAAGGATTGGTGTCCCCTCCATGTCAATCTTCAAACAGTATGCCAATGTTATTCAAGATCACTCAGAAAATGTTACTTCCTTCAAGGGATTTGCCATAGATCTTTTCTATGAAACAGTAAAAAAATTGCCATACCATCTGGAATATGATTATTTTGCGTTTAATGGCACATATGATGAGCTGGTGAAGCAAGTTTATCTGAAGAACTATGATGCAGTTGTTGGTGATGTAACAATAGTGTCCACGCGTTATGAATATGCATCATTCACTCAACCCTTTACTGATACGGGACTGGTGATGGTTGTTCCTGTAAAATCAAAAACAGGTGGTAGAACGTGGCTATTCATGAAGCCTTTCACAAAGCTCATGTGGATTCTAATATTGGTCATCATTTTCTACAATGGCTTTGTTGTATGGATGATTGAAAGAAACCACTGCCCTGAACTGAAGGGCCCTATTCTGCATCAAACCACAACTATGCTGTGGTTGGCTTTCTGTTCTCTGTTCTCTTTGAATGGGGACAGGTTGCATAGCAATTTATCAAGGGTGGCAATGGTAGTATGGTTTTTTGTGGCTCTAATCATTACGCAGATTTACACTGCTAGCCTTGCCAGCATGTTGATTGTTGAACAGTTTGAACCAACTGTAGACAGCATTCAGCAGCTAAAGAACAACAATGCCATTGTAGGATGTGATAGAGGATCCTACTTGCAAAGATATCTGCAGGATGCATTGGGCATCAATGCTGAAAACATCAAGCAGTTTGACTCACAAGAGAGCCATGCTAATGCCCTAAGAAACAAAAAAATAGCAGCTGTCTTCCTTGATGTTCCTGGGGCCAAAATTTTCCTTGCAAAGTACTGTAAAGGGTTTGTTCAAGCAGGGCCTATATACAAACTTGGAGGATATGGATTTGTATTTCCAAGGGGATCTCCATTGCTTCCTGGTGTAAACCAAGCCCTGCTGAACATATCTGAAAGTGGCACACTTCGTGATCTCGAAAACAGTATGCTTGCATCAGAGAAATGTAAAGACATAATTGACCCAGGTGCAGAAACTACTAGTCTTAGCCCTGCAAGCTTCATGGTGCTCTTCATCTTAACTGGAGGCACTTCAACAACTGCTCTCTTAATTTACATATTTTCTGAGAGTTATTTATGGCCTGGACAGAGAACAATGTGGAGTCTAATGATGGCTGTGATTAAACATTGGAGATCTCAAAAGAGACTGTTTTCAAGAAGAGTCCACAATGTTGCAAAAAGTCCTTTAAACTTTGCGACCTAG 2502 0.4025 MHVIIHGNTADNESSDVKGIIGAILDSSSRIGQEHAVAINLALEDFHQKNNLSFALHVRNSQGDPLLAATAARDLIDNQKVQAIIGPQTWAETSLVAEVCTQKSIPFLSLADATPEWAMKKWPFLLQSSPRQIMQMKAIAEIVKSWKLYNVSMIYEDGDSSSTEVLSRLSEALTSVGTELSNVLTVPPLVSSSLSQQLEKLREGQCRVLIVHLSFPLALHLFETAKRMDMMGEGNVWITTGTFTSLVHSLNASTISNMQGVIGVKSYIPKLWHQYGNFYHRFRKKFSSENFEEFNYEPGIFATEAYDAATIVVDSMRKTNKKGGQFLLDKILRSNFTGLSGQIQFNGHERAPKHTFQIINVIGSSYREIGFWSDGLGFSKSLDPNASYSSSVKELGKVVNPTCDIRLRIGVPSMSIFKQYANVIQDHSENVTSFKGFAIDLFYETVKKLPYHLEYDYFAFNGTYDELVKQVYLKNYDAVVGDVTIVSTRYEYASFTQPFTDTGLVMVVPVKSKTGGRTWLFMKPFTKLMWILILVIIFYNGFVVWMIERNHCPELKGPILHQTTTMLWLAFCSLFSLNGDRLHSNLSRVAMVVWFFVALIITQIYTASLASMLIVEQFEPTVDSIQQLKNNNAIVGCDRGSYLQRYLQDALGINAENIKQFDSQESHANALRNKKIAAVFLDVPGAKIFLAKYCKGFVQAGPIYKLGGYGFVFPRGSPLLPGVNQALLNISESGTLRDLENSMLASEKCKDIIDPGAETTSLSPASFMVLFILTGGTSTTALLIYIFSESYLWPGQRTMWSLMMAVIKHWRSQKRLFSRRVHNVAKSPLNFAT* 834
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g1965 833 Pfam Receptor family ligand binding region 37 363 IPR001828 -
Gso6g1965 833 Gene3D - 691 751 - -
Gso6g1965 833 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 14 827 - -
Gso6g1965 833 CDD PBP1_GABAb_receptor_plant 21 382 IPR044440 -
Gso6g1965 833 Pfam Bacterial extracellular solute-binding proteins, family 3 433 741 IPR001638 -
Gso6g1965 833 CDD GluR_Plant 406 744 - -
Gso6g1965 833 Gene3D - 403 518 - -
Gso6g1965 833 PIRSF IGluLR_plant 1 816 IPR017103 -
Gso6g1965 833 Gene3D - 131 373 - -
Gso6g1965 833 Gene3D - 22 352 - -
Gso6g1965 833 Gene3D - 519 649 - -
Gso6g1965 833 PANTHER GLUTAMATE RECEPTOR 14 827 - -
Gso6g1965 833 SUPERFAMILY Periplasmic binding protein-like II 433 741 - -
Gso6g1965 833 Pfam Ligand-gated ion channel 742 776 IPR001320 GO:0015276|GO:0016020
Gso6g1965 833 SUPERFAMILY Periplasmic binding protein-like I 20 374 IPR028082 -
Gso6g1965 833 SMART GluR_14 408 746 IPR001320 GO:0015276|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g1965 Gso-Chr6 34072238 34078115 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g1965 10 799 Ion Channels AT5G27100 31.161 1.10e-128 405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g1965 - - gmx:100776939 1603.19
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso6g1965 6 34072238 34078115 Gso6g1965 6 34072238 34078115 ECH