Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g1964 ATGCACAAGTTCTCTTTTTTGCTTTGGTTTAGTAACATTCATGTAATTATACTTGGGATCACTGCAGCTAATGAGAGTTCTGAGGTTGAGGGCATAATAGGAGCTATTTTAGATAGTAGTTCCCGCATTGGCCAAGAGCATTCAGTGGCTATAAATCTGGCATTGGAAGACTTTAATATAAAAAACAATCTGAGTTTTGCTCTGCATGTAAGAAACTCTCAAGGAGATCCTCTTTTGGCAGCTATTGCAGCTAGAGATCTAATTGATAATCAGAAGGTGCAAGCAATCATTGGACCACAAACATGGGCAGAGACATCTTTAGTGGCTGAAGTATGTACCCAAAAGAGTATACCTCTGCTTTCTCAAGCAGATGCAACTCCAGAATGGGCAATGAAGAAGTGGCCCTTCCTGCTGCAATCCTCACCTAGCCAAATTATGCAGATGAAAGCTATTGCTGAAATTGTGAAGTCTTGGAAACTCTATAATATTACCATGATATGTGAAGATGGAGACTCATCATCTATTGAAGTTTTGTCTCAGCTCTCTGGAGCTCTTAAAGAAGTTGGGACAGAATTAAGCAATGTTATAGCAATTCTGCCTCTAGTTTCTTCTTCGTTGTCTCAACAACTTGAGAAGCTAAGAGAAGGACAATGCAGAGTCCTTATTGTCCATTTGTCCTTTCCTTTGGCACTACACCTGTTTGAAACTGCAAAAAGAATGGATATGATGGGGGAAGGTAATGTATGGATTACTACTGGTACCTTTACAAGCCTTGTTTATTCCTTGAATGCATCCACTATCTCCAATATGCAAGGGATTATTGGAGTCAAGAGCTATATCCAAAGTCTCTGGTACCAAAATGCAAACTTCTACCATAGATTTCGGAAAAATTTTAGCTCAGAGAATTTTGAAGAGTTTAATTATGAGCCTGGGATCTTTGCAGCCCAGGCTTATGATGTTGCATGGATTGTTGTTGATGCAATGAGGAAAACCAACCAAAAAGGGGGTCAACTTTTGCTAGATAAGATATTACTTAGTAATTTTACTGGCTTAAGTGGAACAATTCAGTTCACTGACAATAAATTAACTCCAGCACATACTTTTCAAATAATTAATGTGATAGGGAGGAGCTACAGGGAAATTGGGTTCTGGTCAGATGGACTTGGTTTCTCAAAATCTTTGGAACAAAATGCCTTTTACAGTTCAACAGTGAAGGAATTAGGAAAAGTAGTCAATCCAACATGTGCCATACGACTAAGAATTGGTGTCCCCTCCACATCAACATTCAAACAGTATGTCAATGTTATTCAAGAAGATTCTGGAAATGACACTTCCTTCAAGTTCGAGGGATTTGCTATAGATCTTTTCGAGGAAACAGTAAAAAAATTGCAAGGGATTTACCATGTGGAATATGACTATTTACCCTTTAATGGCACCACATATGATGAACTGGTGAAGAAAGTTTATTGGAAGGAATATGATGCAGTTGTTGGTGATGTCGCAATAGTGTCCACGCGTTATGAATATGTTTCATTCACTCAGCCCTATACTGATCCAGGAGTGGTGATGATTGTTCCTGTTAAATCAAAAACAGGCAACAGAGCATGGCTATTTTTGAAGCCTTTCACGAAGCTCATGTGGGTTCTAATATTGGTCATCATTGTCTACAATGGTTTTGTTGTATGGTTGATTGAAAGAAACCACTGCGCTGAACTTAAGGGCCCTATTCTGCACCAAACCACAACTATGTTGTGGTTGGCTTTCTGTTCTTTGTTCTCTGTGAATGGGGACAGATTACATAGCAATTTATCAAGGGTGGCAACGGTGGTCTGGCTTTTTGTGGCTCTAATCATTACACAGACTTACACTGCTAGCCTTGCCAGCATGTTGACTGTTGAACAGTTTGAACCAACTGTAGACAGCATTCAGCAGCTAAAGAACAGCAATGCCATGGTAGGATATGATAGAGGATCCTACTTGAAAATATATCTCCAGGATGTATTGGGCATCAAAGCTGAAAACATAAAACAATTTGACTCACAGAAGAGCTATGCTGATGCCCTAAGAAACAAAGAAATAGCAGCTGCCTTCCTTGATATCCCTGAGGCCAAAATTTTCCTTGCAAAGAACTGTAAAGGGTTTGTTCAAGCAGGACCTACATACAAAATTGGAGGATATGGATTTGTATTTCCAAAGGGTTCTCCGTTGCTTCATAGTGTAAACCAAGCCCTACTGAACATATCTGAAAATGGCACACTACGTAATCTAGAAAACAATATGCTTGCATCAGAGGAATGTGAAGACATAACTGACCCAAATGTAGAAACTACTAGTCTTAGCCCAGCAAGCTTCATGGTACTCTTCATCTTAACTGGAGGCACTTCAACAATTGTTCTATTAATTTACATATTCTCTGTAAATCATATATACCCTGGACAGAGAACAATGTGGAGTCTAATGATGGCTGTGATTCAAAGTTGGAGATCTCAAAAGAGACTGTTTTCAAGAAGAGTTCACAATGTTGCAGAAAGTCCTTTAAACTCTTCCAACATTTCTAATTTGCCAGCTTTAGCTTAA 2577 0.3904 MHKFSFLLWFSNIHVIILGITAANESSEVEGIIGAILDSSSRIGQEHSVAINLALEDFNIKNNLSFALHVRNSQGDPLLAAIAARDLIDNQKVQAIIGPQTWAETSLVAEVCTQKSIPLLSQADATPEWAMKKWPFLLQSSPSQIMQMKAIAEIVKSWKLYNITMICEDGDSSSIEVLSQLSGALKEVGTELSNVIAILPLVSSSLSQQLEKLREGQCRVLIVHLSFPLALHLFETAKRMDMMGEGNVWITTGTFTSLVYSLNASTISNMQGIIGVKSYIQSLWYQNANFYHRFRKNFSSENFEEFNYEPGIFAAQAYDVAWIVVDAMRKTNQKGGQLLLDKILLSNFTGLSGTIQFTDNKLTPAHTFQIINVIGRSYREIGFWSDGLGFSKSLEQNAFYSSTVKELGKVVNPTCAIRLRIGVPSTSTFKQYVNVIQEDSGNDTSFKFEGFAIDLFEETVKKLQGIYHVEYDYLPFNGTTYDELVKKVYWKEYDAVVGDVAIVSTRYEYVSFTQPYTDPGVVMIVPVKSKTGNRAWLFLKPFTKLMWVLILVIIVYNGFVVWLIERNHCAELKGPILHQTTTMLWLAFCSLFSVNGDRLHSNLSRVATVVWLFVALIITQTYTASLASMLTVEQFEPTVDSIQQLKNSNAMVGYDRGSYLKIYLQDVLGIKAENIKQFDSQKSYADALRNKEIAAAFLDIPEAKIFLAKNCKGFVQAGPTYKIGGYGFVFPKGSPLLHSVNQALLNISENGTLRNLENNMLASEECEDITDPNVETTSLSPASFMVLFILTGGTSTIVLLIYIFSVNHIYPGQRTMWSLMMAVIQSWRSQKRLFSRRVHNVAESPLNSSNISNLPALA* 859
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g1964 858 SMART GluR_14 418 763 IPR001320 GO:0015276|GO:0016020
Gso6g1964 858 PIRSF IGluLR_plant 1 853 IPR017103 -
Gso6g1964 858 CDD PBP1_GABAb_receptor_plant 33 394 IPR044440 -
Gso6g1964 858 Pfam Receptor family ligand binding region 49 374 IPR001828 -
Gso6g1964 858 PANTHER GLUTAMATE RECEPTOR 23 849 - -
Gso6g1964 858 Pfam Ligand-gated ion channel 759 793 IPR001320 GO:0015276|GO:0016020
Gso6g1964 858 Gene3D - 35 365 - -
Gso6g1964 858 Gene3D - 143 385 - -
Gso6g1964 858 SUPERFAMILY Periplasmic binding protein-like II 419 758 - -
Gso6g1964 858 CDD GluR_Plant 418 761 - -
Gso6g1964 858 Pfam Bacterial extracellular solute-binding proteins, family 3 444 758 IPR001638 -
Gso6g1964 858 Gene3D - 688 768 - -
Gso6g1964 858 Gene3D - 417 534 - -
Gso6g1964 858 SUPERFAMILY Periplasmic binding protein-like I 32 386 IPR028082 -
Gso6g1964 858 Gene3D - 535 660 - -
Gso6g1964 858 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 23 849 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g1964 Gso-Chr6 34057137 34063994 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g1964 15 817 Ion Channels AT2G29120 31.412 7.48e-121 387
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g1964 - - gmx:100818623 1649.03