Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g1962 ATGGCGAAAACGAGGCCAGGCAGAAAGGACGTGGACTCATACACCATAAGAGGAACCAACAAGATCGTCCGAGCTGGAGACTGTGTTCTGATGCGGCCCTCGGACACGTCGAAGCCCCCTTACGTGGCGCGCGTGGAGATGATCGAGCAGGATAATAGGAACAACGTGAAGGTGCGTGTGAGGTGGTACTACAGGCCGGAAGAGTCGATTGGTGGTCGGAGACAGTTCCATGGTGCGAAAGAACTGTTCCTCTCCGACCACTACGATGTGCAGAGCGCGCACACCATTGAGGGCAAGTGCGTGGTGCACTCTTTCAAGAACTACACTAAGCTTGAGAATGTGGGTGCTGAGGATTACTATTGTAGATTCGAGTACAAGGCCGCTTCTGGGGCTTTTACCCCTGACCGTGTTGCTGTGTACCATCCTGCTTGCATGGGCATGACTATTGAAGAAGCTAAGAAACTAGATCATTTTGTATGTTCCGAATGTTCATCTGATGATGATATGAAGAAACCCCAAGCTACATTTTCTGCATCACTGGGAGCTGATGGCAAGGTGGAGCCGAAGCGGCGGAAGAGATGA 582 0.5155 MAKTRPGRKDVDSYTIRGTNKIVRAGDCVLMRPSDTSKPPYVARVEMIEQDNRNNVKVRVRWYYRPEESIGGRRQFHGAKELFLSDHYDVQSAHTIEGKCVVHSFKNYTKLENVGAEDYYCRFEYKAASGAFTPDRVAVYHPACMGMTIEEAKKLDHFVCSECSSDDDMKKPQATFSASLGADGKVEPKRRKR* 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g1962 193 Gene3D - 2 137 IPR043151 -
Gso6g1962 193 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 138 178 IPR013083 -
Gso6g1962 193 PANTHER OS08G0421900 PROTEIN 140 189 - -
Gso6g1962 193 PANTHER OS08G0421900 PROTEIN 3 140 - -
Gso6g1962 193 SUPERFAMILY FYVE/PHD zinc finger 139 167 IPR011011 -
Gso6g1962 193 CDD BAH_BAHCC1 22 134 - -
Gso6g1962 193 SMART BAH_4 21 136 IPR001025 GO:0003682
Gso6g1962 193 Pfam BAH domain 23 135 IPR001025 GO:0003682
Gso6g1962 193 PANTHER BNAC03G64850D PROTEIN 140 189 IPR045205 GO:0006325|GO:0035064
Gso6g1962 193 PANTHER BNAC03G64850D PROTEIN 3 140 IPR045205 GO:0006325|GO:0035064
Gso6g1962 193 ProSiteProfiles BAH domain profile. 21 136 IPR001025 GO:0003682
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g1962 Gso-Chr6 33933260 33939181 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g1962 31 132 Core DNA Replication Machinery Family AT4G14700 28.155 5.15e-10 56.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g1962 K25868 - gmx:100778353 389.808