Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g1955 ATGGGAGAGCTACAACACCATCAACAACAGGCAGCAGCAGCAGCAGCACCGTCGAGAGCGGCGATGAGAGGCGTCGGCGGCGGCGAGATTGTGGAGGTGCAAGGCGGCCACATTGTCCGCTCCACCGGACGGAAGGACCGCCACAGCAAAGTCTGCACCGCCAAAGGCCCCAGAGACCGCCGCGTGCGGCTGGCGGCGCACACCGCCATCCAATTCTACGACGTCCAGGACCGCCTGGGCTACGACCGCCCCAGCAAGGCGGTCGACTGGCTCATCAAGAAAGCCAAGGCGGCCATCGACCAGCTCGCGGAGCTCCCGCCATGGAACCCCACTGCCACCTCAATGCAACCACGACAGCTGCCACAAGAAATCGTCCACTGCGAGAACAAATCTCTCGCGATGGACGATTCAATGACCGCTGCCTTCAGTAGCCGCGGCGAAAGCAACGCTTTCGCCTCCCACCAACAAGTGGAGGATAATGAAAATGCTAACAACATTAGCAGCAGCAGCGGCAACAAATACAATACCGGTTCTGGGTTTCTGCCCGCGTCTTTGGACACTGACAACATTGCGGAGACAATCAAGACTTTCTTTCCTGTGGAAGCGACTACGACGTCGTTTCAGAGTTACCCGCCGGCGCCACCGGATTTAGGGCACCAAGATCTGCGGCTCTCGTTGCAGTCCTTTCAGGACCCTATTATGCTTCACCACCAGCCTCATAGCCACCACCAACCGGTTCTCTTTGCCGGAACCGCCGCCGCGGCGCTCGACTTCGACGGCGGTTCCGGCTGGTCAGAGCACCTGCACCAGCACCAGCAACAGAACCACCACTCGGAGGAACAGCGATTGCTCTATGCTGGTGGTAACAGTGGCCACGGCGGTGGGTTTGTGTTCAACACGCCGGCGCCGGTGCAGGTGCCGGCGTTTGGCCAGTTTTTTTCTCAGAGGGGACCCCTTCAGTCCAGTAACACCCCTTCGATTCGTGCTTGGATAGACCCTTCGGTCGATCACCACCACCACCACCATCACTACCTATCACAGTTGATCCACCAAGGATCCGTCGCCGGTGGCGGCGGATTCTCCGGCTTCCGCATTCCTGCACGAATTCAGGGTGAAGAGGAACACGACGGCGTGTCCGACAAGCCGTCCTCTGCTTCCTCTGATTCTCGCCATTGA 1176 0.5944 MGELQHHQQQAAAAAAPSRAAMRGVGGGEIVEVQGGHIVRSTGRKDRHSKVCTAKGPRDRRVRLAAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKAAIDQLAELPPWNPTATSMQPRQLPQEIVHCENKSLAMDDSMTAAFSSRGESNAFASHQQVEDNENANNISSSSGNKYNTGSGFLPASLDTDNIAETIKTFFPVEATTTSFQSYPPAPPDLGHQDLRLSLQSFQDPIMLHHQPHSHHQPVLFAGTAAAALDFDGGSGWSEHLHQHQQQNHHSEEQRLLYAGGNSGHGGGFVFNTPAPVQVPAFGQFFSQRGPLQSSNTPSIRAWIDPSVDHHHHHHHYLSQLIHQGSVAGGGGFSGFRIPARIQGEEEHDGVSDKPSSASSDSRH* 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g1955 391 MobiDBLite consensus disorder prediction 39 57 - -
Gso6g1955 391 ProSiteProfiles TCP domain profile. 44 102 IPR017887 -
Gso6g1955 391 PANTHER TRANSCRIPTION FACTOR TCP4 8 391 - -
Gso6g1955 391 MobiDBLite consensus disorder prediction 370 391 - -
Gso6g1955 391 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 8 391 IPR005333 GO:0003700
Gso6g1955 391 MobiDBLite consensus disorder prediction 36 57 - -
Gso6g1955 391 MobiDBLite consensus disorder prediction 1 20 - -
Gso6g1955 391 Pfam TCP family transcription factor 43 166 IPR017887 -
Gso6g1955 391 MobiDBLite consensus disorder prediction 145 171 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g1955 Gso-Chr6 33345227 33346964 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g1955 3 391 TCP Transcription Factor Family AT1G53230 48.317 5.64e-102 305
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Gso6g1955 TCP 3.1e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g1955 - - gmx:100810078 694.886
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso6g1955 6 33345227 33346964 Gso6g1955 6 33345227 33346964 ECH
Gso12g1315 12 30001330 30004150 Gso6g1955 6 33345227 33346964 ECH