Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g1946 ATGGATCCAACCAAGAAGCGCAAGCTCGACGAGAACGGCTTCAACAACAACGACTCTTCCGACCCCCTCAAGCTCTCCCCCTCCGAAGTCCGCAAGCTCATCGAGCGCTTCACCTCCGACCAGCTCCTCGACATCCTCCAGGACGCGGTGGCGCGCCACCTCGACGTCCTTGCCGCCGTGCGCGCCGTCGCGGACCCTGACGTCTCCCAGCGCAAGCTCTTCATCCGCGGCCTCGGCTGGGACACCACCACCGACGGCCTCCGCTCGCTCTTCTCCACCTTCGGCGACCTCGAGGAGGCCGTTGTCATCCTCGACAAGGCCACTGGCAAGTCCAAGGGATACGGCTTCGTCACCTTCCGCCACGTCGACGGCGCGCTTCTCGCCCTCCGCGAGCCCAGCAAGCGCATCGACGGCCGCGTGACGGTCACGCAGCTCGCCGCCGCCGGGAACTCCGCGTCGAACGTCAACCCCGCTGACGTAGCTCTCCGTAAGATCTACGTCGCCAACGTGCCGCCGGACCTGCCCGCGGACAAGCTTCTCGCGCACTTCTCCGTGTACGGCGAAATCGAAGAAGGTCCGTTAGGGTTTGATAAACAAACAGGAAAGTCGAAAGGGTTTGCTTTATTTGTTTATAAGTCTCCCGAGGGTGCTCAGGCCGCATTGATAGATCCTGTGAAGACTGTGGAAGGGAGGCAGTTGAGTTGTAAGTTGGCGATTACTGATGGGAAGCAGGGAAAGCGGGTAGGGCCGGACTCGGCCCAGGCCCATCACGGGAATGTTCAGCACGGGCATGGAGATGGAGTGGGGGCGGGAATGGGGATGCCTCCTAATGCGGGGTCCGGGCCTGGGCAGTATGGTGGACCTGGACAGTATGGGCCCCCGGTTGGGATGGGTTCTTATGGTGGGTTTGGCGGACAGCCTCCGATGGGCAATCATAACCATCCTCTTAATTCGACGAATCCTGTGCCGGGTTCTTTGGCAGGTGCTGGTGGGTATGGTGGTGGGATGGGTGGGCCATATGGTGGGTACGGTGGTGGACCTGGACCGGGGTCGACTGGCTTTGGCGGTGCTGGTGGGATGGGAGGAGGTGGTGGAGGTGTTGGTGGTGGCGCTGGTGGCGGGCTTGGTGGTGCTGGTGGTGGTAGTTCTATGTATAGATTGCCGGGTTCGGGCGGAATGCCTGCTGGTGGTACTGGAGGGTATCCGGATAGTGGACACTATGGTTTATCAGCTTCCTCTGGGTACCAGAATCAGCATCACCCTCCTTCTGGAACTTCACCTATGCCTAGGGTTCCGCCTGGTTCGATGTATCCCAATATGCCCCCTTACTACTGA 1335 0.6082 MDPTKKRKLDENGFNNNDSSDPLKLSPSEVRKLIERFTSDQLLDILQDAVARHLDVLAAVRAVADPDVSQRKLFIRGLGWDTTTDGLRSLFSTFGDLEEAVVILDKATGKSKGYGFVTFRHVDGALLALREPSKRIDGRVTVTQLAAAGNSASNVNPADVALRKIYVANVPPDLPADKLLAHFSVYGEIEEGPLGFDKQTGKSKGFALFVYKSPEGAQAALIDPVKTVEGRQLSCKLAITDGKQGKRVGPDSAQAHHGNVQHGHGDGVGAGMGMPPNAGSGPGQYGGPGQYGPPVGMGSYGGFGGQPPMGNHNHPLNSTNPVPGSLAGAGGYGGGMGGPYGGYGGGPGPGSTGFGGAGGMGGGGGGVGGGAGGGLGGAGGGSSMYRLPGSGGMPAGGTGGYPDSGHYGLSASSGYQNQHHPPSGTSPMPRVPPGSMYPNMPPYY* 445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g1946 444 MobiDBLite consensus disorder prediction 1 25 - -
Gso6g1946 444 Gene3D - 154 268 IPR012677 -
Gso6g1946 444 PANTHER UBP1-ASSOCIATED PROTEIN 2C 1 408 - -
Gso6g1946 444 CDD RRM_RBM24_RBM38_like 163 238 - -
Gso6g1946 444 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 71 160 IPR000504 GO:0003723
Gso6g1946 444 MobiDBLite consensus disorder prediction 395 444 - -
Gso6g1946 444 CDD RRM_RBM24_RBM38_like 71 146 - -
Gso6g1946 444 Gene3D - 51 153 IPR012677 -
Gso6g1946 444 PANTHER GEO13361P1-RELATED 1 408 - -
Gso6g1946 444 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 163 255 IPR000504 GO:0003723
Gso6g1946 444 MobiDBLite consensus disorder prediction 425 444 - -
Gso6g1946 444 SMART rrm1_1 72 144 IPR000504 GO:0003723
Gso6g1946 444 SMART rrm1_1 164 236 IPR000504 GO:0003723
Gso6g1946 444 MobiDBLite consensus disorder prediction 409 424 - -
Gso6g1946 444 MobiDBLite consensus disorder prediction 243 325 - -
Gso6g1946 444 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 73 140 IPR000504 GO:0003723
Gso6g1946 444 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 165 222 IPR000504 GO:0003723
Gso6g1946 444 SUPERFAMILY RNA-binding domain, RBD 151 268 IPR035979 GO:0003676
Gso6g1946 444 SUPERFAMILY RNA-binding domain, RBD 64 146 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g1946 Gso-Chr6 32693447 32698579 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g1946 159 238 C2H2 Transcription Factor Family AT2G19380 38.750 2.33e-10 60.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g1946 K12741 - gmx:100776220 716.072
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso6g1946 6 32693447 32698579 Gso6g1946 6 32693447 32698579 ECH