Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g1945 ATGTACAAAGGAAACAAGACAATTGTTGCATATATGATATACCCTGCTATCATTTTCGATTTCTTTTTGGTCCAATTGATGAATGACAGCTATGGAATTCTATTTTACATTGTGTTCAGCAAAGAAACAAGCCAGGCACTAGGTTTGATCAATTGGAGGAGCAGGGTTACTCTGATGACTAGTTGCTTTCATCTTTTCAGAAAGAAAGGATCTTCCTCAGGCACACAGTTGACCGGAGTTGATTTAGATGTTTCAGAAATTCAGAATGTCAACATCTACACTTACAGAGAATTGCGAATTGCCACTGAAGGTTTTAGCAATGCAAACAAGATAGGGCAGGGAGGTTTTGGAGTAGTCTATAAGGGAAAGCTGAGAAACGGTTCTTTGGCAGCTATAAAGGTTTTATCGGCTGAATCAAGACAAGGGGTCCGGGAGTTCTTGACAGAAATCAAGGTGATCTCTAGTATAGAGCATGAGAATCTAGTCAAGTTACATGGATGTTGTGTGGAAGACAACCACAGAATTTTGGTATATGGCTATCTTGAGAATAACAGCCTAGCACAAACACTTATTGGTTCAGGCCATAGCAGCATCCAATTAAGTTGGCCTGTAAGGAGGAACATTTGCATAGGTGTTGCTCGGGGCCTTGCATTCCTTCATGAGGAGGTTCGGCCACACATTATCCATAGAGACATAAAAGCAAGCAATGTACTACTTGATAAAGACCTCCAGCCCAAAATTTCAGATTTTGGCCTTGCAAAGCTTATTCCACCAAACCTGACCCATATTAGTACTCGTGTTGCTGGAACAGTTGGGTATCTAGCACCTGAATATGCAATCCGAAATCAAGTGACTAGAAAATCAGATGTCTATAGTTTTGGAGTTCTACTATTAGAGATTGTTAGTAGGAGGCCTAACACAAACAGACGTTTGCCTGTTGAAGAACAGTATCTTCTCACAAGGGCTTGGGATTTGTATGAGAGTGGGGAGGCAGAAAAATTGGTGGATGCTTTTCTAGAAGGAGACTTCAATATTGAGGAGGCAGTCAGATTTTGTAAGATTGGTCTCCTTTGCACGCAGGATTCTCCGCAGCTCCGGCCCTCTATGTCCAGTGTGCTTGAGATGCTTTTAGGTGAAAAAGACGTGAATGAGGAGAATGTGACAAAACCGGGCATGATATTTGAATTTGTGGAAGCCAAAAGTGCAGGTAAACAAAAATGCAAAGCTGAAGTGGATAGTAAATCTTTGTTGGCTGAAGGGAAGCAAGATGATTCATCTTCATCAGGAACCATGAGCTCTTTTGCTACCATGACCTTCACAGCAATTTATGATAGAAGCGATTAG 1344 0.4137 MYKGNKTIVAYMIYPAIIFDFFLVQLMNDSYGILFYIVFSKETSQALGLINWRSRVTLMTSCFHLFRKKGSSSGTQLTGVDLDVSEIQNVNIYTYRELRIATEGFSNANKIGQGGFGVVYKGKLRNGSLAAIKVLSAESRQGVREFLTEIKVISSIEHENLVKLHGCCVEDNHRILVYGYLENNSLAQTLIGSGHSSIQLSWPVRRNICIGVARGLAFLHEEVRPHIIHRDIKASNVLLDKDLQPKISDFGLAKLIPPNLTHISTRVAGTVGYLAPEYAIRNQVTRKSDVYSFGVLLLEIVSRRPNTNRRLPVEEQYLLTRAWDLYESGEAEKLVDAFLEGDFNIEEAVRFCKIGLLCTQDSPQLRPSMSSVLEMLLGEKDVNEENVTKPGMIFEFVEAKSAGKQKCKAEVDSKSLLAEGKQDDSSSSGTMSSFATMTFTAIYDRSD* 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g1945 447 ProSitePatterns Protein kinases ATP-binding region signature. 111 133 IPR017441 GO:0005524
Gso6g1945 447 Pfam Protein kinase domain 106 308 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso6g1945 447 CDD STKc_IRAK 111 376 - -
Gso6g1945 447 Gene3D Transferase(Phosphotransferase) domain 1 181 391 - -
Gso6g1945 447 SMART serkin_6 105 365 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso6g1945 447 SUPERFAMILY Protein kinase-like (PK-like) 85 376 IPR011009 -
Gso6g1945 447 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 59 433 - -
Gso6g1945 447 Gene3D Phosphorylase Kinase; domain 1 79 180 - -
Gso6g1945 447 ProSitePatterns Serine/Threonine protein kinases active-site signature. 227 239 IPR008271 GO:0004672|GO:0006468
Gso6g1945 447 ProSiteProfiles Protein kinase domain profile. 105 377 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso6g1945 447 PANTHER RECEPTOR-LIKE KINASE 59 433 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g1945 Gso-Chr6 32665512 32669457 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g1945 83 422 Receptor kinase-like Gene Family AT1G56120 50.287 1.56e-104 328
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Gso6g1945 Pkinase 3.5e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g1945 - - gmx:100801735 870.537
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso6g1945 6 32665512 32669457 Gso6g1945 6 32665512 32669457 ECH