Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g1943 ATGTCACATTCCGGGAAGAAACCCGTGTCGTCCGAGTTAGGGCTCACCGAGCGGTTCCGCGACTCACTGAGTTGCTCCGACGACAACAAACCCGATTTCCGAGAACTCGATTTGAGTTCGCCGGTTTCAACATTGCGGCCACGTCAGCACCACAGTGCGCCCACCACAACGAGTAGCAGTAGCACGAGCACTAGCAGCGGCTCGACCGGGTCCGGTTCGGGTCGGAACGGAAACAATAACGCGGTTTCGAAGAGATCTCATTCTGGTGAGTTGTCTGGGTCGAGCGAGACCAATAGTCCGACCCGGGTTTCGAAACCGGGTCACCGGAGATCCAATTCGGGTCAAAGCCAGAGATCTCCTTCGTCGTCCTCCTCCGCTGTCAATTCTCCGCCGCTGAACGTTCTCCCGGCCGGGAACATCTGCCCGTCCGGAAGGGTTCTCAAGGCGGCGACCGCGGCCGTGGCGCCAAGCCGGAGCTCCAGGTCGGATGTTCTGGGCTCCGGCACGGGGAATTACGGCCACGGGAGCATAATGCGAGGTGGAAAAGGTGGCGGCGGCGGCGGCGGTGGTGGTGGTGATGTGAGGATCGCTGGCGAATCGGCGAAGGGCGTGGATCCGGAGGAGGTGAAGAGGATTGGGAATGAAGAGTATAAGAGAGGGCACTTTGTTGAGGCGTTGTGTTTGTATGATCGAGCAATTGCAATGTCTCCCGGCAATGCCGCTTACCGGAGCAACCGTGCGGCGGCGTTGACCGGTTTAGGACGGTTGCCGGAGGCGGTGAAGGCGTGTGAGGAGGCTGTGGGGTTGGATCCTAATTATGGGAGGGCGCATCAGCGCTTGGCAATGTTGTTTCTCAGGTTAGGACAGGTTGAGGATGCTAGGAAGCACCTTTGTTATCCTGGCCTGCAGCTGGATCCTGCTGAGTTGCAGAAGTTGCAAATTGTGGAAAAGCATATTAACAAATGTGGCGATGTACGGAGGATACGAGATTGGAAAGGTGTACTGAGGGAGGTTGATGCTGCTGTTGCTGCTGGAGCAGACTCTTGTGTTCAGCTCTTTATGTGTAGAGCAGAAGCCCTTCTCAAGCTACACCAGATTGATGATGCTGAATCATGTATATCATGGATTCCCAAAAGCAAGCCACATCCTGGTTCCTTATCACAGGCAAGATTTTTTGGGATGTTTTCTGAGGCTTATTGCTTCTTCGTTAGAGCTCAGATTGAGATGGCTTTTGGAAGGTTTGAGAACGCAGTTACAACTGCTGAGAAAGCTAGTCAGATTGACCCCCGAAACGTTGAAGTTGCTGTTTTGCTCAACAATGTGAGGATGGTTGCTAGAGCTCGATTGCGTGGTAATGATCTTTTTAAATCAGAAAGGTTCACTGAGGCATGCTCGGCATATGGGGAAGGTTTGAGGCTCGACCCTTCAAACTCTATCCTCTATTGCAATAGAGCAGCATGTTGGTTTAAGCTTGGGCAATGGGAAAGATCAATTGAAGACTGCAATCAAGCTTTACACATCCAACCTGATTACACTAAAGCCATTCTTCGAAGGGCTGCCTCAAATAGCAAGTTAGAAAGGTGGGAAGAAGCAGTAACAGATTATGAGCTTTTGCGGAGAGAACTACCAGATGACAATGAAGTTGCCGAAAATCTGTTTCATGCGCAAGTAGCATTAAAGAAATCACGTGGGGAAGAAGTGCATAATTTAAAGTTTGGTGGTGAAGTGGAGGACATATCAGGTCTTGAGCAGTTTAGAGCGGCAATATCTTTACCAGGTGTTTCTGTTGTCCATTTTGAAACTGCGTCAAACTTGCAATGTAAGCAGATATCGCCATTGGTGAATACACTATGCAGTCGTAATCCATCTATTAACTTCCTCAAGGTGAATATTCAAACAAGCCCCGCAGTCGCTGCTGCTGAGAATGTTAGGGTTGTACCAACCTTCAAGATCTATAAAAATGGCAGTCAAGTGAAGGAAATTATATGTCCTAGTCATGATATGTTGGAACACTCCATTAGGCATTACAGCTTGTAG 2037 0.5017 MSHSGKKPVSSELGLTERFRDSLSCSDDNKPDFRELDLSSPVSTLRPRQHHSAPTTTSSSSTSTSSGSTGSGSGRNGNNNAVSKRSHSGELSGSSETNSPTRVSKPGHRRSNSGQSQRSPSSSSSAVNSPPLNVLPAGNICPSGRVLKAATAAVAPSRSSRSDVLGSGTGNYGHGSIMRGGKGGGGGGGGGGDVRIAGESAKGVDPEEVKRIGNEEYKRGHFVEALCLYDRAIAMSPGNAAYRSNRAAALTGLGRLPEAVKACEEAVGLDPNYGRAHQRLAMLFLRLGQVEDARKHLCYPGLQLDPAELQKLQIVEKHINKCGDVRRIRDWKGVLREVDAAVAAGADSCVQLFMCRAEALLKLHQIDDAESCISWIPKSKPHPGSLSQARFFGMFSEAYCFFVRAQIEMAFGRFENAVTTAEKASQIDPRNVEVAVLLNNVRMVARARLRGNDLFKSERFTEACSAYGEGLRLDPSNSILYCNRAACWFKLGQWERSIEDCNQALHIQPDYTKAILRRAASNSKLERWEEAVTDYELLRRELPDDNEVAENLFHAQVALKKSRGEEVHNLKFGGEVEDISGLEQFRAAISLPGVSVVHFETASNLQCKQISPLVNTLCSRNPSINFLKVNIQTSPAVAAAENVRVVPTFKIYKNGSQVKEIICPSHDMLEHSIRHYSL* 679
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g1943 678 Pfam Thioredoxin 585 670 IPR013766 -
Gso6g1943 678 SUPERFAMILY Thioredoxin-like 481 676 IPR036249 -
Gso6g1943 678 MobiDBLite consensus disorder prediction 21 35 - -
Gso6g1943 678 CDD TRX_family 583 664 - -
Gso6g1943 678 Gene3D Tetratricopeptide repeat domain 204 564 IPR011990 GO:0005515
Gso6g1943 678 MobiDBLite consensus disorder prediction 1 133 - -
Gso6g1943 678 SUPERFAMILY TPR-like 206 434 IPR011990 GO:0005515
Gso6g1943 678 Gene3D Glutaredoxin 571 677 - -
Gso6g1943 678 Pfam Tetratricopeptide repeat 480 511 IPR001440 GO:0005515
Gso6g1943 678 ProSiteProfiles TPR repeat profile. 478 511 IPR019734 GO:0005515
Gso6g1943 678 MobiDBLite consensus disorder prediction 152 206 - -
Gso6g1943 678 MobiDBLite consensus disorder prediction 155 169 - -
Gso6g1943 678 MobiDBLite consensus disorder prediction 42 132 - -
Gso6g1943 678 ProSiteProfiles TPR repeat profile. 206 239 IPR019734 GO:0005515
Gso6g1943 678 SMART tpr_5 206 239 IPR019734 GO:0005515
Gso6g1943 678 SMART tpr_5 274 308 IPR019734 GO:0005515
Gso6g1943 678 SMART tpr_5 444 477 IPR019734 GO:0005515
Gso6g1943 678 SMART tpr_5 512 545 IPR019734 GO:0005515
Gso6g1943 678 SMART tpr_5 350 383 IPR019734 GO:0005515
Gso6g1943 678 SMART tpr_5 240 273 IPR019734 GO:0005515
Gso6g1943 678 SMART tpr_5 478 511 IPR019734 GO:0005515
Gso6g1943 678 SMART tpr_5 398 431 IPR019734 GO:0005515
Gso6g1943 678 PANTHER TPR REPEAT-CONTAINING THIOREDOXIN 14 676 IPR044534 -
Gso6g1943 678 PANTHER TPR REPEAT-CONTAINING THIOREDOXIN TTL1 14 676 - -
Gso6g1943 678 Pfam Tetratricopeptide repeat 402 431 IPR019734 GO:0005515
Gso6g1943 678 Pfam Tetratricopeptide repeat 213 272 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g1943 Gso-Chr6 32484808 32488952 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g1943 443 588 U-box Gene Family AT3G07370 27.869 5.13e-09 56.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g1943 - - gmx:100799577 1250.34
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso6g1943 6 32484808 32488952 Gso6g1943 6 32484808 32488952 ECH