Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g1934 ATGGATCAAATGAGTCAACAAGTCTATTTTCACTCCGAAAGTATCCATTTCAGTGGCACCAACATCTGTCTAGCTTCAGGGAATGGAATTAGTCTAGATTGCCATTATGTACTAGATGCTCATGACAGCTATTTAGATCAGCACTTTCAACCATATGTACAAGGTCATGCTTTGGCTTGGCATCTGTCTCTTCCAGTGCCATATGTACAAGCTTTCATTGCTAATGGAAGTTCATCAGAGAATGGAAGAATTGGTCCACAGAGATATCATGATACAACTAGCAGCAGAGGTGGCCACAGATTTCCACAAAGATATCATGATACAACTGGCAGCAGAAGTGGCCACAGATTTCCACAAAGATATCATGATACAACTGGCAGCAGAAGTGGCCACAGATTTCCACAGAGATATCATGATTCAACTGGCAGCAGAAGTGGCCACAGATTTCCCCATCCTCCTCCACAGTACCATAGCTTTCATCATCAAGTACTGCCTGCACAAGTGATCAGAGGTCACTCCTTCAACATTCATCCTCCCGTAACTGCACCTTCGTATAGAGTTCCAACAAATCCTTCACACGGTTCTTCAATCCTCATACATGATGCTTTTGAGATGGGTGCTAGGCATCCTGGCTTTGCACCATTTGCAGGCGCACGCATACGCCAGTCTCATAGAGGCAACTTGCAGGAGATGATAACTCTTATAAATCTTCCTCCTGCAGTCTTTTTCCCAGATGATGATGTTGCTTTACTGGTTGACCATCATACTGATATGCACTTGGACACTGAAGATATGTCTTATGAGGATCTTCTTGAATTAGGTGAGCAGATTGGCAACGCAAAATCGGGTTTATCAGAAAAAATAATTACAAGTCAAATGAAGACCAAAACTTATATACTACCTACTAATGCTACTAACTTGGAGGAGGCAGATTCTGAGGAACAGGAAACTGATATTTGCATAATATGCCAGGATGAATATAAGAACAAAGAGAATATTGGAATTCTTCGATGCGGCCATGAATATCACGCAGATTGTTTAAGGAGATGGTTACTTGAGAAAAATGTCTGCCCCCTGTGCAAATCAGTAGCATTGACTCCTCCAGGAGAAAAACAATGA 1119 0.42 MDQMSQQVYFHSESIHFSGTNICLASGNGISLDCHYVLDAHDSYLDQHFQPYVQGHALAWHLSLPVPYVQAFIANGSSSENGRIGPQRYHDTTSSRGGHRFPQRYHDTTGSRSGHRFPQRYHDTTGSRSGHRFPQRYHDSTGSRSGHRFPHPPPQYHSFHHQVLPAQVIRGHSFNIHPPVTAPSYRVPTNPSHGSSILIHDAFEMGARHPGFAPFAGARIRQSHRGNLQEMITLINLPPAVFFPDDDVALLVDHHTDMHLDTEDMSYEDLLELGEQIGNAKSGLSEKIITSQMKTKTYILPTNATNLEEADSEEQETDICIICQDEYKNKENIGILRCGHEYHADCLRRWLLEKNVCPLCKSVALTPPGEKQ* 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g1934 372 MobiDBLite consensus disorder prediction 76 92 - -
Gso6g1934 372 PANTHER ZINC FINGER, C3HC4 TYPE (RING FINGER) PROTEIN 40 369 - -
Gso6g1934 372 SUPERFAMILY RING/U-box 312 367 - -
Gso6g1934 372 MobiDBLite consensus disorder prediction 93 145 - -
Gso6g1934 372 SMART ring_2 320 360 IPR001841 -
Gso6g1934 372 Pfam Ring finger domain 319 361 IPR001841 -
Gso6g1934 372 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 280 365 IPR013083 -
Gso6g1934 372 ProSiteProfiles Zinc finger RING-type profile. 320 361 IPR001841 -
Gso6g1934 372 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 40 369 IPR045191 GO:0061630
Gso6g1934 372 MobiDBLite consensus disorder prediction 76 149 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g1934 Gso-Chr6 31763020 31765836 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g1934 253 368 C3H Transcription Factor Family AT2G15530 43.966 9.89e-30 119
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g1934 K19041 - gmx:100820042 789.26