Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g1908 ATGCAGCAAGGTGATCCAACGGTCCTAAGCTTGAGGCCTGGTGGTGGTCGTGGCGGTGGAAGCAGGCTTTTCGCTCACTCGTCCTCCTCTTCCTCTCTCTCCGCCGATCTCCCTCTCTCGCGCCCTCATGCCTCTTTCTCTCTCAAGACTGGAGATTCACGGTTTGAGGGTCATGAGCGTGTGCGATATACCAGAGATCAGCTTTTACAGCTTAAAGAGGCTGTTGAGGTCCCTGATGATATTCTTAAGATTAAACAAGATATAGAAGCTGAACTTTTTGGTGAAGATCCAAGTTGGGGCCGTGCTGAAAGCAATCTTCCTCATCAATTACAAAATCGGTATTCTGAGCCAGATAACCGTGATTGGCGTGGTCGTTCTGGACAACCTCCTGCTAGTACAGATGAGAGATCTTGGGAAAACCTCAGAGATAACCGAGAGTTTGGTAATAGACAGCAGGATGCTAGTCAGGTTAATCGCCATGACCAACTTAATTCCCAGTTTGCAAGAACACAAATCTCTTCTATGCAAGGGGGAGGACCTACTCCTACGCTAGTCAAGGCTGAGGTTCCGTGGTCAGCCAGAAGGGGAAGTCTATCTGAAAAGGATCGTGTATTGAAGACTGTGAAAGGAATACTCAATAAGTTGACTCCTGAGAAATTTGATGTCCTGAAGGGTCAGTTAATCGATTCTGGCATTACATCAGCTGACATCTTAAAGGATGTCATTTCACTTATTTTTGATAAGGCTGTTCTAGAACCAACATTTTGCCCCATGTATGCTCATCTGTGTTCTGATCTAAATGAAAAGCTGCCTCCATTCCCATCTGAAGAACCTGGTGGGAAAGAAATCACCTTTAAGAGAGTGCTCTTGAATAATTGCCAGGAGGCTTTTGAAGGTGCTGAAAATCTGAGGGAGGAACTAAAAAGGATGACTGTCCCTGAGCGGGAGATGGAGCGTACGGACAAGGGAAGGCTGCTCAAGCTACGTACCCTTGGAAATATCCGTTTAATTGGTGAGCTATTGAAGCAGAAGATGGTTCCTGAAAAGATTGTCCATCACATTGTTCAGGAGCTTTTAGGATCCCCAGACAGCAAATCTTGCCCAGTTGAGGAAAATGTTGAAGCCATATGTCAGTTTTTCAATACTATTGGCAAGCAGCTTGATGAAAGTCCTAAATCACGGCGTATAAATGATATTTACTTTAGCCGATTGAAAGAATTAAGCTCAAACCTACAACTTGTACCCCGGCTTAGGTTCATGATTCGGGATGTTATAGAGTTGCGTGCTAGTAACTGGGTTCCTAGACGGGAAGAGGTCAAAGCCAAAACCATTACTGAAATTCATTCAGAGGCAGAAAAAAATCTTGGTTTGCGGCCAGGAGCAACTGCAAGTATGAGAAATTCCCGTGGCGGTGTTCAAGGAAATGCCAGCTCTGGGGGCTTTCATATTGCTCGACCTGGTGCTGGGGGTTTGATGCCTGGAATGCCAGGGACCAGGAAGATGCCTGGATTTGATAATGACAACTGGGAGATGCCTAAGACTAGATCTATGCCAAGAGGAGATTCTTCAGGAGTTCAAGCTGCTGGATGCAGCAACTCTGCTTTACTTTCCAAGTCCACAACCCTCAATTCAAAACTGCTACCTCAAGGTAGTGGTGGTATTATAAGTGGAAGAAATAGTGCCCTAGTACATGGAGGTGGTACATTTTCTACTTCCTCAACAAACTTTTGTTTAGGTCCTGAGGCAGCGCCTCAACTCTCTTCACCTGCTCCTGTTCCTGTATCCTCTGAGAAGCCACAACCTCCAGCTGCAAGATTGAATACTGATGATCTTTGCCGCAGAACTGTCTCTCTTCTAGAAGAATATTTCAGTGTTCGGCTTTTGGAAGAGGCATTACAGTGTGTGGAGGAATTAAAATCTCCTTCTTACCACCCTGAGGTTGTTAAGGAAGCCATATACCTTGCACTTGATAAAAGTCCACCATGTGTTGAAACTGTTGCCAATCTCATTGAGTATCTGTATATTAAGAAGATTCTTACCCCTTTAGACATAGGGACTGGCTGTTTGTTATTTGGTTCTCTGCTGGATGATATTGGCATAGATTTACCTAAAGCACCAAGTAATTTTGGTGAGATAATTGGGAAACTAATTTTGGCTGGGGGATTGGATTTTAAGGTGGTGGGAGAGATTCTCAAGAAGGTGGATGATGACATGTTCCGGAGAGCAATATTTGACAGTGTGGTGGGGGCCATTAGATCTGCATCCGAGCAAGCCATTTTGGATGCACAAACTTCTGATATTGAGGTCTGCCAGAGTCAGCTCAAGTGA 2328 0.4489 MQQGDPTVLSLRPGGGRGGGSRLFAHSSSSSSLSADLPLSRPHASFSLKTGDSRFEGHERVRYTRDQLLQLKEAVEVPDDILKIKQDIEAELFGEDPSWGRAESNLPHQLQNRYSEPDNRDWRGRSGQPPASTDERSWENLRDNREFGNRQQDASQVNRHDQLNSQFARTQISSMQGGGPTPTLVKAEVPWSARRGSLSEKDRVLKTVKGILNKLTPEKFDVLKGQLIDSGITSADILKDVISLIFDKAVLEPTFCPMYAHLCSDLNEKLPPFPSEEPGGKEITFKRVLLNNCQEAFEGAENLREELKRMTVPEREMERTDKGRLLKLRTLGNIRLIGELLKQKMVPEKIVHHIVQELLGSPDSKSCPVEENVEAICQFFNTIGKQLDESPKSRRINDIYFSRLKELSSNLQLVPRLRFMIRDVIELRASNWVPRREEVKAKTITEIHSEAEKNLGLRPGATASMRNSRGGVQGNASSGGFHIARPGAGGLMPGMPGTRKMPGFDNDNWEMPKTRSMPRGDSSGVQAAGCSNSALLSKSTTLNSKLLPQGSGGIISGRNSALVHGGGTFSTSSTNFCLGPEAAPQLSSPAPVPVSSEKPQPPAARLNTDDLCRRTVSLLEEYFSVRLLEEALQCVEELKSPSYHPEVVKEAIYLALDKSPPCVETVANLIEYLYIKKILTPLDIGTGCLLFGSLLDDIGIDLPKAPSNFGEIIGKLILAGGLDFKVVGEILKKVDDDMFRRAIFDSVVGAIRSASEQAILDAQTSDIEVCQSQLK* 776
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g1908 775 ProSiteProfiles MI domain profile. 610 732 IPR003891 -
Gso6g1908 775 SMART if4_15 205 431 IPR003890 GO:0003723|GO:0005515
Gso6g1908 775 Pfam MIF4G domain 205 431 IPR003890 GO:0003723|GO:0005515
Gso6g1908 775 SMART ma3_7 611 723 IPR003891 -
Gso6g1908 775 Gene3D - 196 432 - -
Gso6g1908 775 PANTHER MIF4G DOMAIN-CONTAINING PROTEIN / MA3 DOMAIN-CONTAINING PROTEIN ISOFORM 2 3 774 - -
Gso6g1908 775 SUPERFAMILY ARM repeat 606 748 IPR016024 -
Gso6g1908 775 Gene3D - 604 770 - -
Gso6g1908 775 MobiDBLite consensus disorder prediction 97 139 - -
Gso6g1908 775 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4 GAMMA 3 774 IPR045208 GO:0003743
Gso6g1908 775 Coils Coil 290 310 - -
Gso6g1908 775 MobiDBLite consensus disorder prediction 1 51 - -
Gso6g1908 775 Pfam MA3 domain 613 723 IPR003891 -
Gso6g1908 775 SUPERFAMILY ARM repeat 199 434 IPR016024 -
Gso6g1908 775 MobiDBLite consensus disorder prediction 23 38 - -
Gso6g1908 775 MobiDBLite consensus disorder prediction 587 606 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g1908 Gso-Chr6 29389408 29396712 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g1908 1 772 Eukaryotic Initiation Factors Gene Family AT5G57870 63.258 0.0 950
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g1908 K03260 - gmx:100816500 1505.35