Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g1906 ATGGAAGCCAGCGCTGGACTGGTCGCTGGGTCACATAACCGCAATGAGCTAGTTGTCATTCATGGCCATGAAGAGCCGAAGGCTTTGAAGAACTTGGATGGGCAAGTGTGTGAGATTTGTGGTGATGGCGTGGGACTCACGGTGGATGGAGACTTGTTTGTGGCTTGCAATGAGTGTGGTTTTCCAGTGTGCAGGCCTTGCTATGAGTATGAAAGGAGAGAAGGAAGCCACCTTTGCCCACAGTGCAAAACCAGATACAAGCGTCTCAAAGGGAGCCCCCGAGTGGAGGGAGATGATGATGAAGAGGATGTGGATGATATTGAGCATGAATTCAATATTGATGAGCAAAAGAACAAGCATGGCCAGGTTGCAGAAGCCATGCTTCATGGGAGGATGAGCTATGGAAGAGGTCCTGAAGATGATGACAATTCCCAGTTCCCAACACCTGTCATTGCTGGTGGTCGTTCTAGGCCTGTAAGTGGGGAGTTCCCAATATCATCTAATGCTTATGGGGATCAGATGTTATCCTCTTCACTGCATAAAAGAGTGCATCCATATCCAGTGTCTGAACCTGGAAGTGCAAGATGGGACGAAAAAAAAGAAGATGGATGGAAAGATAGAATGGATGACTGGAAATTGCAGCAAGGCAATTTGGGGCCTGAACCGGATGAAGATCCAGATGCAGCCATGTTAGATGAAGCAAGGCAACCACTGTCAAGGAAAGTGCCAATAGCATCCAGCAAAATCAATCCATATAGAATGGTGATTGTGGCACGTCTGGTTATTCTTGCTTTCTTCCTCAGATACAGACTCATGAACCCAGTACATGATGCCCTGGGGCTATGGCTAACCTCTATCATATGTGAAATCTGGTTTGCTTTTTCATGGATTCTGGATCAGTTTCCCAAATGGTTTCCCATTGATAGAGAGACCTACCTTGACCGTCTTTCCATCAGGTATGAGCGTGAAGGTGAACCAAACATGCTTGCTCCTGTAGATGTTTTTGTTAGTACCGTGGATCCCATGAAGGAACCTCCTCTGGTTACAGCAAACACTGTTCTTTCAATCTTGGCCATGGATTACCCGGTTGATAAAATATCATGCTACATTTCTGATGATGGAGCCTCAATGTGTACATTTGAGTCCTTATCAGAAACTGCAGAGTTTGCTAGAAAGTGGGTACCGTTTTGTAAGAAATTTTCCATAGAACCTCGGGCACCTGAGATGTACTTCAGCGAGAAGATTGACTACCTAAAGGACAAAGTGCAACCCACCTTTGTTAAGGAGCGTCGAGCTATGAAGAGGGAATACGAAGAGTTTAAGGTTAGGATCAATGCACTTGTTGCTAAGGCCCAGAAAGTTCCTCAGGGAGGATGGATCATGCAGGATGGGACACCATGGCCAGGGAATAACACTAAGGATCATCCTGGTATGATTCAAGTGTTTCTTGGTAGCAGTGGAGGTCTTGATACTGAAGGAAACCAACTTCCTCGCCTTGTTTATGTTTCCAGAGAGAAAAGGCCTGGTTTTCAACACCACAAGAAAGCTGGTGCCATGAATGCTCTGGTTCGGGTATCTGCTGTTCTCACAAATGCTCCTTTCATGTTGAACTTGGATTGTGATCACTATGTCAATAACAGCAAGGCTGCCCGAGAGGCCATGTGCTTCTTGATGGACCCACAAACTGGGAAGAAGGTCTGCTATGTCCAGTTTCCTCAAAGATTTGATGGTATTGATACACATGATCGTTATGCCAACAGGAACACAGTTTTCTTTGATATTAACATGAAGGGTCTAGATGGTATTCAAGGTCCTGTATATGTGGGGACTGGATGTGTTTTCAGGAGGCAAGCTTTGTATGGCTATAATCCTCCCAAGGGTCCAAAGCGTCCAAAAATGGTAAGCTGTGATTGTTGCCCGTGTTTTGGAAGCCGCAAGAAGTATAAGGAGAAGAATGATGCAAATGGAGAGGCTGCAAGCCTAAAAGGGATGGATGATGACAAAGAGGTGTTGATGTCCCAAATGAATTTTGAGAAGAAATTTGGACAATCCTCTATTTTTGTGACTTCTACCTTGATGGAAGAGGGTGGTGTGCCTCCTTCTTCAAGTCCAGCTGCCCTGCTTAAAGAAGCCATTCATGTGATTAGCTGTGGATATGAAGATAAAACTGAATGGGGACTTGAGCTTGGTTGGATCTATGGATCTATCACAGAAGATATTCTAACAGGTTTTAAGATGCATTGCCGTGGGTGGAGGTCCATTTATTGTATGCCAAAGAGAGCTGCATTCAAGGGTACTGCTCCTATCAACTTGTCAGATCGTCTCAACCAGGTTCTTCGTTGGGCACTTGGTTCCATTGAGATTTTCTTTAGTCACCATTGCCCTCTATGGTATGGCTTCAAGGAAAAGAAGCTAAAGTGGCTTGAGAGATTTGCCTATGCAAACACAACTGTCTATCCATTCACCTCCATTCCTCTAGTTGCCTACTGTATTCTTCCAGCAGTTTGTTTACTCACTGACAAATTCATCATGCCACCGATTAGCACCTTTGCTGGTTTGTACTTTGTTGCTCTCTTCTCCTCAATCATTGCAACTGGTATTCTTGAGTTGAAATGGAGTGGAGTGAGCATTGAGGAATGGTGGAGAAATGAGCAGTTTTGGGTCATTGGTGGTGTATCAGCTCACCTCTTTGCTGTTATACAAGGTCTGCTAAAGGTTCTGGCTGGAATTGACACCAATTTCACTGTTACATCAAAGGCAACAGATGATGAAGAGTTTGGAGAATTGTACACCTTTAAGTGGACTACACTCTTGATTCCTCCAACCACTATTTTGATCATTAACATTGTTGGTGTTGTTGCTGGAATCTCAGATGCCATAAACAATGGGTACCAATCCTGGGGACCACTCTTTGGAAAGCTCTTCTTTTCCTTCTGGGTGATTGTCCATCTCTATCCATTCCTTAAAGGTTTGATGGGTCGCCAAAATCGCACACCCACCATTGTTGTGATTTGGTCAGTGCTATTGGCCTCTATTTTCTCCTTACTTTGGGTAAGAATTGATCCATTTGTCCTCAAGACTAAGGGACCTGATACCAAGCTATGTGGAATCAACTGCTAA 3120 0.4449 MEASAGLVAGSHNRNELVVIHGHEEPKALKNLDGQVCEICGDGVGLTVDGDLFVACNECGFPVCRPCYEYERREGSHLCPQCKTRYKRLKGSPRVEGDDDEEDVDDIEHEFNIDEQKNKHGQVAEAMLHGRMSYGRGPEDDDNSQFPTPVIAGGRSRPVSGEFPISSNAYGDQMLSSSLHKRVHPYPVSEPGSARWDEKKEDGWKDRMDDWKLQQGNLGPEPDEDPDAAMLDEARQPLSRKVPIASSKINPYRMVIVARLVILAFFLRYRLMNPVHDALGLWLTSIICEIWFAFSWILDQFPKWFPIDRETYLDRLSIRYEREGEPNMLAPVDVFVSTVDPMKEPPLVTANTVLSILAMDYPVDKISCYISDDGASMCTFESLSETAEFARKWVPFCKKFSIEPRAPEMYFSEKIDYLKDKVQPTFVKERRAMKREYEEFKVRINALVAKAQKVPQGGWIMQDGTPWPGNNTKDHPGMIQVFLGSSGGLDTEGNQLPRLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNAPFMLNLDCDHYVNNSKAAREAMCFLMDPQTGKKVCYVQFPQRFDGIDTHDRYANRNTVFFDINMKGLDGIQGPVYVGTGCVFRRQALYGYNPPKGPKRPKMVSCDCCPCFGSRKKYKEKNDANGEAASLKGMDDDKEVLMSQMNFEKKFGQSSIFVTSTLMEEGGVPPSSSPAALLKEAIHVISCGYEDKTEWGLELGWIYGSITEDILTGFKMHCRGWRSIYCMPKRAAFKGTAPINLSDRLNQVLRWALGSIEIFFSHHCPLWYGFKEKKLKWLERFAYANTTVYPFTSIPLVAYCILPAVCLLTDKFIMPPISTFAGLYFVALFSSIIATGILELKWSGVSIEEWWRNEQFWVIGGVSAHLFAVIQGLLKVLAGIDTNFTVTSKATDDEEFGELYTFKWTTLLIPPTTILIINIVGVVAGISDAINNGYQSWGPLFGKLFFSFWVIVHLYPFLKGLMGRQNRTPTIVVIWSVLLASIFSLLWVRIDPFVLKTKGPDTKLCGINC* 1040
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g1906 1039 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 20 110 IPR013083 -
Gso6g1906 1039 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 1 1039 - -
Gso6g1906 1039 Pfam Cellulose synthase 332 1033 IPR005150 GO:0016020|GO:0016760|GO:0030244
Gso6g1906 1039 CDD mRING-HC-C4C4_CesA_plant 35 85 - -
Gso6g1906 1039 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 485 623 IPR029044 -
Gso6g1906 1039 SUPERFAMILY RING/U-box 22 107 - -
Gso6g1906 1039 Pfam Zinc-binding RING-finger 27 104 IPR027934 -
Gso6g1906 1039 PANTHER CELLULOSE SYNTHASE A CATALYTIC SUBUNIT 7 [UDP-FORMING] 1 1039 - -
Gso6g1906 1039 Coils Coil 430 450 - -
Gso6g1906 1039 SUPERFAMILY Nucleotide-diphospho-sugar transferases 345 852 IPR029044 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g1906 Gso-Chr6 29301389 29306920 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g1906 1 1039 Cell Wall Biosynthesis AT5G17420 85.975 0.0 1848
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g1906 K10999 - gmx:100815436 2140.54