Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g1905 ATGGAAGCAAGTACTGGACTTTTTGCTGGTACCCCAAACAGCAATGAGCTTGTGGTCATTCAAGGACATGATGAGCCTAAGCCTGTGAAGAACTTAGATGGTCAACTCTGTGAGATATGTGGTGATTCTGTGGGACTTACGGTGGATGGAGACTTATTTGTAGCTTGTGAAGAGTGTGGTTTCCCTGTGTGCAGGCCATGTTATGAGTATGAAAGAAGGGAAGGGACTCAAGTTTGTCCTCAGTGTCATACAAGATACAAGCGAACCAAAGGAAGCCCAAGAGTTTTGGGAGATGAGGATGAAGATGACGTGGATGATATTGAACATGAATTCAAGCATGAAGAGATGCTACAGGGGAACAAGACCCATAGAGATAGTGATGTGGGTTTAGCAAAGGTGAATGGGGAGTTGCCCATATCTTCTAACGGTGTTGAAGAACCTGGTGCAAAGTTGGATGACAAGGAGAAAGTAGATGAGTGGATGTTGCACCAAGGCAATCTATGGCCTGAAACTGATGCGTCAGATGATCCCGTAAAGGCCATGAAAGAGCCACTGTCAAGGAAAGTACCAATACCATCAGGCAGACTCAGTCCTTACAGAATGATGGTTGTGGCTAGGCTCCTCCTTCTATTACTGTTCTTTCAGTACAGAATCTTTCACCCAGTACCTGATGCAATTGGACTATGGTTCATATCTGTGACATGTGAAATCTGGCTTGCATTATCCTGGATGATTGATCAGCTTCCCAAATGGTTCCCCATTGATCGTGAGACATATCTTGACCGTCTTTCAATCAGGTTTGAACCAGAGAACAAGCCCAATATGCTTTCTCCAATAGATATCATTGTCACTACTGTGGATCCAATCAAGGAACCTCCTTTAGTAACAGCCAACACTGTTCTTTCAATCTTGGCCCTGGATTACCCTGCTGACAAAATCTCATGCTACGTTTCTGATGATGGAGCTTCCATGCTCACCTTTGAAGTTCTTCAAGAAACTGCTGAGTTTTCCAGAAAGTGGGTACCTTTCTGCAAAAAATTTTCTGTAGAACCTAGAGCACCAGAAAAGTACTTGACTGAGAAGATAGATTTTCTAAAGGATAAGCTTCAATCCACTTATGTGAAAGAACGCCGCACTATGAAGAGAGAATATGAGGAATTTAAGGTGAGGATAAATGCACTTGTGGCTAAATCCATGAGAGTTCCCCCAGAAGGGTGGACTATGAAAGATGAGACACCATGGCCAGGAAACAACTCCAAAGACCATCCAAGTATGATACAAGTCCTTCTTCCTCACAATGTAGGTAATGAACTTCCTTGTCTTGTCTACACATCTCGTGAGAAAAGGCCTGCATTCCAACACCACAACAAAGCTGGCGCAATCAATGCCATGCTTCGTGTATCCGCTGTGTTAAACAATGCTCCTTTTGTGCTCAACTTGGATTGCAATCATTATGTAAATAACAGCAAAGTCGTGCGAGAGGCCATGTGTTTCTTCATGGACATACAACTTGGGAATGGCATTGGCTTTGTACAGTTTCCACTAAGATTTGACAGCCTCGATAGGAATGATCGTTATGCTAACAAAAACACTGTTTTATTTGATATTAACTTGAGGTGCCTAGATGGAATTCAGGGACCTGCTTATGTTGGTTCAGCATGTATCTTCAGAAGGAAAGCCTTAACTGGCTTTGATTCTCCAAAGGCTTCAAAACGCCCAAGCATGGTGCAAGTACACTCAAAACAGGACGAGAATGGAGAAGAAGCAAGCAAAACAGCAGCAGCAACAGATGAGGACAAGGAGCTATTGAAGTCCGAGAATAAATTTGGGATGTCCACAATTTTCATGAATTCTTCATGGACAGAAGAAGGTGGTGTTGATCCTTCTTCCAGTCAGGAAGCCCTTCTTAAAGAAGCCATTCATGTCATGAACTCCAGATATGAAGACAGAACTCTCTGGGGATATGAGGTGGGTTTGAGCTATGGATCCATAGCAACAGATACTCTGACAAGTATGAAGATGCATTGTGGTGGTTGGAGGTCTGTATATTGCATGCCAAAGAGAGATCCATTCAGGGGTACAGCTCCTATCAACCTTACAGAAAGACTCAACCAGGTGCTGAGATGGGCAGTGGGATCACTTCAGATCCTATTCAGCAGCCATTGCCCACTTGTGTATGGCCTCAATGGAGGAAGACTCAAGGGACTCCAACGAATTGCCTATATTAACAGCACTGTCTACCCCTTCACCTCAATACCCCTCCTAATTTATTGTACCATTCCTGCCATCTGCTTGCTCACTGATAAGTTCATCACACCATCGGTAGGCACTTTTGCAAGCTTGATCTTCATTGCATTGTTCATCTCAATCTTTGCCTCGGCGATTCTTGAATTGAGATGGAGTAGAGTTAGCCTTGAGGAATGGTGGAGAAGCCAGCAATTCTGGGTCATTGGAAGTGTGTCTGCAAACCTCTTTGCCGTTTTGCAAGGCATTATGGGAGCCCTGCCACTTTCTAGTAGAGTCAACAAAAACTTCAGCATTGTATCAAAGGCACCAGATGAGGTAGAGTTTCGTGAACTCTATGCCATTAGATGGACTGCACTTCTAATACCTCCAACCACAATCATAATAATCAATCTCATTGGTATTGTGGCTGGCTTCACCGATGCCATAAACAGTGGTGAACATTCTTGGGGAGCTTTGCTTGGGAAACTGTTCTTTTCTTTATGGGTTATTGTCCATTTGTACCCTTTCCTTAAAGGTCTAATGGGTAGGCAGAACAGAACACCAACTCTTATTGTCATATGGTCTGTGCTCTTGGCTTCTATCTTTTCCTTGGTTTGGGTCAGAGTTGACCCTTTTGTGTTGAAAACAAAGGGGCCTGATGTCAAGCAATGTGGAATCAGCTGCTGA 2913 0.4363 MEASTGLFAGTPNSNELVVIQGHDEPKPVKNLDGQLCEICGDSVGLTVDGDLFVACEECGFPVCRPCYEYERREGTQVCPQCHTRYKRTKGSPRVLGDEDEDDVDDIEHEFKHEEMLQGNKTHRDSDVGLAKVNGELPISSNGVEEPGAKLDDKEKVDEWMLHQGNLWPETDASDDPVKAMKEPLSRKVPIPSGRLSPYRMMVVARLLLLLLFFQYRIFHPVPDAIGLWFISVTCEIWLALSWMIDQLPKWFPIDRETYLDRLSIRFEPENKPNMLSPIDIIVTTVDPIKEPPLVTANTVLSILALDYPADKISCYVSDDGASMLTFEVLQETAEFSRKWVPFCKKFSVEPRAPEKYLTEKIDFLKDKLQSTYVKERRTMKREYEEFKVRINALVAKSMRVPPEGWTMKDETPWPGNNSKDHPSMIQVLLPHNVGNELPCLVYTSREKRPAFQHHNKAGAINAMLRVSAVLNNAPFVLNLDCNHYVNNSKVVREAMCFFMDIQLGNGIGFVQFPLRFDSLDRNDRYANKNTVLFDINLRCLDGIQGPAYVGSACIFRRKALTGFDSPKASKRPSMVQVHSKQDENGEEASKTAAATDEDKELLKSENKFGMSTIFMNSSWTEEGGVDPSSSQEALLKEAIHVMNSRYEDRTLWGYEVGLSYGSIATDTLTSMKMHCGGWRSVYCMPKRDPFRGTAPINLTERLNQVLRWAVGSLQILFSSHCPLVYGLNGGRLKGLQRIAYINSTVYPFTSIPLLIYCTIPAICLLTDKFITPSVGTFASLIFIALFISIFASAILELRWSRVSLEEWWRSQQFWVIGSVSANLFAVLQGIMGALPLSSRVNKNFSIVSKAPDEVEFRELYAIRWTALLIPPTTIIIINLIGIVAGFTDAINSGEHSWGALLGKLFFSLWVIVHLYPFLKGLMGRQNRTPTLIVIWSVLLASIFSLVWVRVDPFVLKTKGPDVKQCGISC* 971
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g1905 970 PANTHER CELLULOSE SYNTHASE 1 970 - -
Gso6g1905 970 Coils Coil 377 397 - -
Gso6g1905 970 SUPERFAMILY Nucleotide-diphospho-sugar transferases 279 786 IPR029044 -
Gso6g1905 970 MobiDBLite consensus disorder prediction 567 599 - -
Gso6g1905 970 SUPERFAMILY RING/U-box 21 107 - -
Gso6g1905 970 MobiDBLite consensus disorder prediction 577 599 - -
Gso6g1905 970 CDD mRING-HC-C4C4_CesA_plant 35 85 - -
Gso6g1905 970 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 421 566 IPR029044 -
Gso6g1905 970 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 268 376 IPR029044 -
Gso6g1905 970 Pfam Cellulose synthase 279 964 IPR005150 GO:0016020|GO:0016760|GO:0030244
Gso6g1905 970 Pfam Zinc-binding RING-finger 27 104 IPR027934 -
Gso6g1905 970 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 20 110 IPR013083 -
Gso6g1905 970 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 1 970 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g1905 Gso-Chr6 29276455 29281804 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g1905 1 970 Cell Wall Biosynthesis AT5G17420 62.561 0.0 1322
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g1905 K10999 - gmx:100807219 1919.05