Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g1904 ATGGCGAAGCAGCAAACACACGAAATCAATGCAAGCACTAACAATAACATTAACACAACTAAAACTGTCACCACCAAGGTGAAACGAACAAGGAGAAGTGTCCCCAGAAATTCCCCACCTCAACGCAGCTCAATATACAGAGGAGTCACTAGACACCGATGGACAGGTCGATACGAAGCTCATTTGTGGGACAAGAATTGCTGGAATGAGTCACAGAACAAGAAAGGACGGCAAGGTGCTTATGACGATGAAGAGGCCGCAGCACATGCTTATGATCTAGCAGCATTGAAATACTGGGGTCAAGATACCATTCTTAATTTTCCGTTATCGACCTACCAGAATGAACTGAAGGAAATGGAGGGTCAATCTAGGGAAGAGTATATTGGATCACTAAGGAGGAAAAGCAGCGGTTTTTCTCGTGGAGTTTCTAAATACAGAGGTGTTGCAAGACACCATCATAACGGAAGATGGGAAGCTCGGATTGGCAGGGTTTTCGGCAACAAATATCTTTACCTCGGAACTTATGCAACCCAAGAAGAAGCTGCCACAGCATATGACATGGCAGCTATTGAATATCGAGGACTCAACGCTGTGACCAATTTTGACCTCAGCCGCTATATCAAGTGGCTTAAGCCCAATAACAACAATAACAAAGTCAATTCTAATAATCTTATTGTCTCTATCCCTAATTGTGCGACCAACTTTACCCCAAACTCTAACCAACAACAAGGATTCAATTTTTTCAACAGTCAAGAATCATTCAATAATAATGAAGAAGCGGCAATGACTCAGCCTCGGCCAGCTGCTGCCACGTCAGCCCTAGGACTTTTGCTTCAATCATCCAAGTTTAAGGAAATGATGGAGATGACTTCTGCCATAGATTTGTCAACACCGCCATCAGAATCTGAGTTGCCGCCATGCACATTTCCCGATGACATTCAAACATATTTTGAGTGTGAAGATTCCCATAGATATGGAGAAGGGGATGACATCATGTTTAGCGAGCTCAACGGCTTTGTGCCCCCTATGTTCCATTGTGATGACTTTGAGGCTTGA 1056 0.4366 MAKQQTHEINASTNNNINTTKTVTTKVKRTRRSVPRNSPPQRSSIYRGVTRHRWTGRYEAHLWDKNCWNESQNKKGRQGAYDDEEAAAHAYDLAALKYWGQDTILNFPLSTYQNELKEMEGQSREEYIGSLRRKSSGFSRGVSKYRGVARHHHNGRWEARIGRVFGNKYLYLGTYATQEEAATAYDMAAIEYRGLNAVTNFDLSRYIKWLKPNNNNNKVNSNNLIVSIPNCATNFTPNSNQQQGFNFFNSQESFNNNEEAAMTQPRPAAATSALGLLLQSSKFKEMMEMTSAIDLSTPPSESELPPCTFPDDIQTYFECEDSHRYGEGDDIMFSELNGFVPPMFHCDDFEA* 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g1904 351 CDD AP2 143 204 IPR001471 GO:0003700|GO:0006355
Gso6g1904 351 SUPERFAMILY DNA-binding domain 44 110 IPR016177 GO:0003677
Gso6g1904 351 Gene3D AP2/ERF domain 143 204 IPR036955 GO:0003700|GO:0006355
Gso6g1904 351 Gene3D AP2/ERF domain 45 110 IPR036955 GO:0003700|GO:0006355
Gso6g1904 351 Pfam AP2 domain 143 194 IPR001471 GO:0003700|GO:0006355
Gso6g1904 351 Pfam AP2 domain 45 100 IPR001471 GO:0003700|GO:0006355
Gso6g1904 351 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 2 336 - -
Gso6g1904 351 SMART rav1_2 144 208 IPR001471 GO:0003700|GO:0006355
Gso6g1904 351 SMART rav1_2 45 114 IPR001471 GO:0003700|GO:0006355
Gso6g1904 351 MobiDBLite consensus disorder prediction 1 24 - -
Gso6g1904 351 ProSiteProfiles AP2/ERF domain profile. 45 108 IPR001471 GO:0003700|GO:0006355
Gso6g1904 351 SUPERFAMILY DNA-binding domain 143 204 IPR016177 GO:0003677
Gso6g1904 351 ProSiteProfiles AP2/ERF domain profile. 144 202 IPR001471 GO:0003700|GO:0006355
Gso6g1904 351 PANTHER AP2 DOMAIN-CONTAINING TRANSCRIPTION FACTOR 2 336 - -
Gso6g1904 351 PRINTS Ethylene responsive element binding protein signature 46 57 IPR001471 GO:0003700|GO:0006355
Gso6g1904 351 PRINTS Ethylene responsive element binding protein signature 184 204 IPR001471 GO:0003700|GO:0006355
Gso6g1904 351 MobiDBLite consensus disorder prediction 1 44 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g1904 Gso-Chr6 29160083 29164272 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g1904 41 206 AP2-EREBP Transcription Factor Family AT5G57390 71.598 1.02e-85 264
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Gso6g1904 AP2 3.4e-09 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g1904 K09285 - gmx:100804555 623.239
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g1456 4 42977997 42980345 Gso6g1904 6 29160083 29164272 GST