Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g1888 ATGGAATTGAAAAAGGGCAATCTTGTCAGGTTCTACACGGATGGCAGAAAGCATAAGGATTCGCTTTGGGGAGCAAGAGCAACTGAACCTCCAGGGCTTAAACCTAGCAATTTGCTACCATTAGGGAAAAATAGAATTGCTGAAACATTTAGAATTGGAGGATCGAAGGTATTCCCGGAGGACCACGAGCCATGGCGTAAAAGAATACTTGACCCGGGTAGCGAGATTGTGTTGAAATGGAACCGGGTCTTCATAGTTTCATGCTTGGTGGCTCTTTTTGTTGATCCATTGTACTTTTATTTGCCTAGTGTGATAGAAAATACAGGGTCTTCATGTTTTAGGACAGCATATGTGGCACCAAGCTCACGGGTGTTTGGCAGGGGTGAACTTGTGATGGACCCAAAGAAGATTGCAAGGAGATATATAAGATCTGATTTCTTCATTGATTTTATTGCTACACTCCCTCTACCTCAGATGGTCATTTGGTTTATTATACCAGCAACAAGAAGCCCTCAAACTGATCACAAAAATAACGCACTTGCATTGATTGTTTTGCTTCAATATGCTCCAAGATTATATTTGATTTTTCCATTAAGCTCTCAAATAATTAAAGCAACAGGAGTGGTTACGAAGACTGCTTGGGCCGGAGCTGCATATAATTTGCTGTTGTATATGTTAGCTAGCCATGTTTTAGGGGCAGCATGGTATCTTCTATCCTTGGATCGATACACTACATGTTGGAAATCCTTTTGCAAAAAGGAACATAATCCTGAAAACTGCTTTCTTTACCTAGACTGCAGTTCTTCAAATATTAAGCTGCATGAGATATGGGCAAACAGTACAAATGTGTTTAGCAGCTGTGATCCCAGTAATGATGATATTAATTTCAAGTATGGAATATTTGAAAGCGCAGTAAAGAAGCATGTTGTTTCTTCAAAATTTATCCCGAAATACCTTTATTGTTTATGGTGGGGATTGCAACAATTAAGTTCTTATGGGCAGAACCTAGAAACTAGCACATTTATTGGAGAAACATCATTTGCTATTGTCATTGCCATCTTGGGTCTTGTATTGTTTTCCCATTTGATTGGGAACATGCAGACATATTTGCAATCAATTACTATAAGGCTTGAGGAGTGGAGGCTTAAGCAAAGAGACACAGAGGAGTGGATGAGGCATCGCCAACTCCCTGAAGATTTGAGAAGTCGTGTTAGACGATTTGTTCAATATAAATGGCTTGCTACGCGTGGAGTTGATGAGGAAATCATTTTACGTGCATTGCCTGCTGATCTTCGCCGTGATATCCAATGCCATTTGTGCTTAAACCTTGTTAGACGAGTTCCCTTCTTCTCACAGATGGATGATCAACTTCTGGATGCAATATGTGAGCGGCTGGTATCGTCTCTGAGCACTCAAGGAACCTACATTGTTCGTGAGGGTGACCCCGTGACTGAAATGCTTTTTATCATTAGAGGTAGACTGGATAGTTCTACTACAAATGGTGGCCGTAGTGGTTTCTTCAACTCAATCATACTGAGACCTGGAGATTTTTGTGGGGAGGAACTACTTTCTTGGGCTTTACTCCCAAAATCAACTATTAATTTGCCTTCTTCAACTAGGACAGTTAAAGCCCTAAGTGAGGTTGAAGCTTTTGCTCTACGGGCTGAAGACCTCAAGTTTGTTGCTAATCAATTTAGGCGCCTTCACAGTAAGAAGCTGCAGCACACTTTTCGATTTTATTCCCACCATTGGAGGACTTGGGCAGCCTGCTTTATACAGGCTGCTTGGCGCCGATATAAGAAAAGGATGACTATGAAAGATCTCAGTTTGAGGGAATCTATTCCTTTAGATGAAACAGTAGCTAGTGAGAGAGAACATGAGGACTATGCTGCTGGTTCAAATTCAACTCGGGCTAAATTAAACCTTGGGGCTACAATTCTTGCTTCGAGATTTGCTGCTAACACAAGAAGAGGAGCTCTAAAGATTAAAGATGACATGCCCCAGTTACAGAAGCCTGAAGAACCTGACTTTTCCACTGAAGCTGATGATGATTAG 2055 0.4122 MELKKGNLVRFYTDGRKHKDSLWGARATEPPGLKPSNLLPLGKNRIAETFRIGGSKVFPEDHEPWRKRILDPGSEIVLKWNRVFIVSCLVALFVDPLYFYLPSVIENTGSSCFRTAYVAPSSRVFGRGELVMDPKKIARRYIRSDFFIDFIATLPLPQMVIWFIIPATRSPQTDHKNNALALIVLLQYAPRLYLIFPLSSQIIKATGVVTKTAWAGAAYNLLLYMLASHVLGAAWYLLSLDRYTTCWKSFCKKEHNPENCFLYLDCSSSNIKLHEIWANSTNVFSSCDPSNDDINFKYGIFESAVKKHVVSSKFIPKYLYCLWWGLQQLSSYGQNLETSTFIGETSFAIVIAILGLVLFSHLIGNMQTYLQSITIRLEEWRLKQRDTEEWMRHRQLPEDLRSRVRRFVQYKWLATRGVDEEIILRALPADLRRDIQCHLCLNLVRRVPFFSQMDDQLLDAICERLVSSLSTQGTYIVREGDPVTEMLFIIRGRLDSSTTNGGRSGFFNSIILRPGDFCGEELLSWALLPKSTINLPSSTRTVKALSEVEAFALRAEDLKFVANQFRRLHSKKLQHTFRFYSHHWRTWAACFIQAAWRRYKKRMTMKDLSLRESIPLDETVASEREHEDYAAGSNSTRAKLNLGATILASRFAANTRRGALKIKDDMPQLQKPEEPDFSTEADDD* 685
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g1888 684 Gene3D Helix hairpin bin 377 440 - -
Gso6g1888 684 SUPERFAMILY Voltage-gated potassium channels 74 371 - -
Gso6g1888 684 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 41 681 - -
Gso6g1888 684 Pfam Ion transport protein 80 375 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Gso6g1888 684 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 14-RELATED 41 681 - -
Gso6g1888 684 Gene3D - 79 374 - -
Gso6g1888 684 SMART cnmp_10 449 580 IPR000595 -
Gso6g1888 684 MobiDBLite consensus disorder prediction 662 684 - -
Gso6g1888 684 Pfam Cyclic nucleotide-binding domain 472 560 IPR000595 -
Gso6g1888 684 Gene3D Jelly Rolls 447 567 IPR014710 -
Gso6g1888 684 SUPERFAMILY cAMP-binding domain-like 379 571 IPR018490 -
Gso6g1888 684 ProSiteProfiles cAMP/cGMP binding motif profile. 449 579 IPR000595 -
Gso6g1888 684 CDD CAP_ED 449 580 IPR000595 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g1888 Gso-Chr6 27709884 27718388 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g1888 1 683 Ion Channels AT4G30360 66.209 0.0 957
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g1888 K05391 - gmx:100810967 1370.14