Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g1887 ATGTTGATAACGGTTAGGGAAGCTTCTTCTTGTTCTTCTTCTCCCCTCAGCTTCTGGCTTAATCGTTTCAACGCAAAACCCTCCAAAACACTCAAAACAACATCCATTTGCCAAGCTAGTTTCTCTGTCCAAAGAAGACCCACTCATTCATGGAATACTCGCCATCTCTCTACCAGCAGTGAGCTAGCAAATTTTGATCCCTTGGGTATTAACTCAGATTTATCTTCTGGTCTGAATTCTACCTGGAAAAATCTGGTGTGCTCAATTACACAAACATTTGAGAGTACTTCAAGTGCAGAAAAGGGAAAACCTAACTCTTCTCAAGGGGTAGCAGCTGCAATAGAGGATAGTTCAATAGATTTTGGTGACTTTTTTAAGGGCCCACTGCCAGGGAAGTTTCTCAAGCTTTTAGGGTTTCTTGCCTTGTCAAGGCTTGGAGTGTACATACCCCTAGGTGGAGTTAATAGGGAGGCTTTTGTTGGAAATTTGGATCAGAACAGTCTATTAAGCACTTTGGACTCGTTTTCTGGTGGTGGTATTGGTAGACTTGGGGTATGCTCCCTTGGCATTGTTCCCTTCATCAATGCACAGATTGTTTTCCAGCTTCTTGCACAAGTATATCCCAAATTGCAAGATCTTCAAAAGAGAGAAGGTGAGGCTGGAAGAAAGAAAGTTCTGCAGTACACTCGATATGCTTCAGTTGGATTTGCCATTGTGCAGGCAATTGGCCAAGTTCTTTTCCTACGTCCCTATGTCAATGACTTTTCTACAGAGTGGGTTATTTCTTCTGTTATCTTATTGACTCTTGGCTCTGTGTTTACAATGTACATCGGAGAACGAATTACAGACCTAAAACTTGGGAATGGCACCTCTCTTTTGATATTCACAAACATTATCTCGTACTTGCCAGCTTCTTTTGGTAGGACAATTGCTCAAGCATTTAATGATGCAAACTACATTGGACTTGGTACCATTGTTTTGTCCTTCTTTTTGTTGGTAGTTGGTATTGTTTATGTTCAGGAAGCAGAGAGAAAAATCCCGCTTAACTATGCTTCTAGATTCACCAGCAGAAGCACTGGTCTTGAAAAGTCCGCTTACCTACCCTTTAAGGTAAATAGTTCTGGAGTAATGCCTATCATATTTTCTACATCATCATTAGCTCTTCCTGGTACTTTAGCGCGCTTCACTGGTTTAACTGCACTAAAGAAGGCTGCAGTGGCGTTAAATCCAGGAGGTTCTTTCTACCTTCCATTTAACATACTTTTGATAGCCTTCTTCAACTACTATTACACTTTCCTACAACTGGACCCTGATGATGTGAGTGAACAATTGAAACGTCAAGGTGCTTCAATTCCACTTGTCAGACCAGGCAGAACTACAGCTACATTTATCAAAACAGTTCTTAGTAGAATATCAGTTCTGGGTTCAACATTTTTGGCTATCTTGGCTGCTGGTCCAGCAGTTGTTGAACAGATCACTCACTTGACCGCATTCCGGGGATTTGCAGGAACATCTATTCTTATTCTTGTTGGTTGTGCAACAGACACAGCAAGAAAAGTTCAAGCTGAGATTATATCCCAGAAATACAAGAACATAGAGTTCTATGATTTTGATAAATACTAA 1623 0.4085 MLITVREASSCSSSPLSFWLNRFNAKPSKTLKTTSICQASFSVQRRPTHSWNTRHLSTSSELANFDPLGINSDLSSGLNSTWKNLVCSITQTFESTSSAEKGKPNSSQGVAAAIEDSSIDFGDFFKGPLPGKFLKLLGFLALSRLGVYIPLGGVNREAFVGNLDQNSLLSTLDSFSGGGIGRLGVCSLGIVPFINAQIVFQLLAQVYPKLQDLQKREGEAGRKKVLQYTRYASVGFAIVQAIGQVLFLRPYVNDFSTEWVISSVILLTLGSVFTMYIGERITDLKLGNGTSLLIFTNIISYLPASFGRTIAQAFNDANYIGLGTIVLSFFLLVVGIVYVQEAERKIPLNYASRFTSRSTGLEKSAYLPFKVNSSGVMPIIFSTSSLALPGTLARFTGLTALKKAAVALNPGGSFYLPFNILLIAFFNYYYTFLQLDPDDVSEQLKRQGASIPLVRPGRTTATFIKTVLSRISVLGSTFLAILAAGPAVVEQITHLTAFRGFAGTSILILVGCATDTARKVQAEIISQKYKNIEFYDFDKY* 541
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g1887 540 Hamap Protein translocase subunit SecY [secY]. 121 533 IPR026593 -
Gso6g1887 540 ProSitePatterns Protein secY signature 2. 276 293 IPR030659 -
Gso6g1887 540 SUPERFAMILY Preprotein translocase SecY subunit 125 523 IPR023201 -
Gso6g1887 540 ProSitePatterns Protein secY signature 1. 184 203 IPR030659 -
Gso6g1887 540 Pfam SecY 185 516 IPR002208 GO:0015031|GO:0016020
Gso6g1887 540 Gene3D SecY subunit domain 124 529 IPR023201 -
Gso6g1887 540 TIGRFAM 3a0501s007: preprotein translocase, SecY subunit 132 529 IPR002208 GO:0015031|GO:0016020
Gso6g1887 540 PRINTS Preprotein translocase SecY subunit signature 133 151 - -
Gso6g1887 540 PRINTS Preprotein translocase SecY subunit signature 183 203 - -
Gso6g1887 540 PRINTS Preprotein translocase SecY subunit signature 225 248 - -
Gso6g1887 540 PRINTS Preprotein translocase SecY subunit signature 257 282 - -
Gso6g1887 540 PRINTS Preprotein translocase SecY subunit signature 283 306 - -
Gso6g1887 540 PRINTS Preprotein translocase SecY subunit signature 374 393 - -
Gso6g1887 540 PRINTS Preprotein translocase SecY subunit signature 413 435 - -
Gso6g1887 540 PRINTS Preprotein translocase SecY subunit signature 468 486 - -
Gso6g1887 540 PRINTS Preprotein translocase SecY subunit signature 502 520 - -
Gso6g1887 540 PANTHER SECY/SEC61-ALPHA FAMILY MEMBER 51 538 IPR002208 GO:0015031|GO:0016020
Gso6g1887 540 PANTHER PREPROTEIN TRANSLOCASE SUBUNIT SCY1, CHLOROPLASTIC 51 538 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g1887 Gso-Chr6 27704269 27708494 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g1887 22 540 Chloroplast and Mitochondria Gene Families AT2G18710 80.303 0.0 840
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g1887 K10956 - gmx:100810430 1014.22