Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g1883 ATGCCCCCTTGGGTAGTTTCACATCACCCCCTGAAAATTACAAAACCACACTTTCCCGCCCACTTCTACCTCCTACTCCTCCTCTTCTTCTTTTCTTCTTCAGCTTCTCCTTTCTCTCTCTGCATCTTTTCCCTACCCTCTGCCTCTGTCGGCAAGTTTCCTCTAAGGGTTTCGGCGATGCCAGATTTGGGAAACCTTTCTCTCTCCGCGCCTCTCACACTCTCTCGCTGCTCCTCCAATGATGCCCTTGACGCTCCCGTCAAAACCCTACCCAATGCTTTCAGTTCCGAGCCTGGTTCCGAACCTGCCTTTGAGCCTCGGGTTTTGAAGCGCACCCGAGGCTCCCTGGATCGGGTCAAGAAGCCCCCCATCGCCGACAAGGCCTTCCAGGATCGCCTCAAAGATCTTCCTTTTCTAGTTGGCGCTCCCATGATGGAAGAATGTTGTTTTTGCTGCCATTTTATTTACCCTGGTGATGATGAGCTCTTGTGTTCGGTTCGAGGATGTGACGCACGCTACCATTCTGAATGTGCAAAAGATGCTGTTGGGGCTTCCAATCTGAAAAAATTCAAGTGTCCACAACATGTGTGCTTCATTTGCAAGCTAAAGAAGCAGTTTAGGTGTGTTAGGTGTAAAATAGCATTCCATAGTAAATGTGCACCATGGTCAGATTCAGTGGTGCAACTAAAAGATCATCCCGGGCAAGCTGTTTGCTGGAGGCATCCTTCTGATTGGCGCTTGGATAGAAAGACTGATGCTTCAACAAGTGACATTTCGGAAGTATTTTGTCGCTTGCCTCTTCCATTTATCAGTGAGGAGTTTAAGATTGACTTCACTTGGAAAGACATGGACAATAAGATGGAGCAGCCATCACCATATGTACACATAAGACGCAATATATACTTAGTAAAGAAGAAACGTAGTGATGCGGATGATGGTGCAGGGTGCACCAGTTGCAGTTCTACTTCTACATGTTCTGATGATTGTGTGTGCAGGGTTCAATGCATAAGCTGTTCAAAGGCATGTCGCTGCTCAGAAAATTGCAACAATCGACCATTTCGCAAGGAGAAAAAGATCAAGATTGTCAAGACTGAACTTTGTGGATGGGGAGTGGAGGCCGCTGAAACAATTGATAAAGGTGGATTTATAATTGAGTATATTGGAGAAGTCATTGACGATGCTTTATGTGAAAAAAGGCTTTGGGACATGAAATACAGGGGTGTACAGAATTTTTACATGTGTGAGATTCGGAAAGACTTCACAATAGATGCAACTTTCAAAGGAAATACTTCACGCTTTTTGAACCATAGCTGTGATCCCAACTGTGTTTTGGAGAAGTGGCAAGTTGATGGTGAAACACGTGTGGGTGTATTTGCCGCTTGTTCAATAGAAGCTGGAGAGCCGTTAACATATGATTACAGATTTGTGCAATTTGGTCCAGAGGTGAAATGCCACTGTGGTGCTGCAAATTGTCAAGGCTTTCTAGGGACAAAAAAGAAAATTGGCAAGCTAGACCTCTATTGGGGTTCAAAACGTAAGAGAACATCGAAAGCTTCTTGCATTACGTTAGTAACAGCTGTATGA 1584 0.4501 MPPWVVSHHPLKITKPHFPAHFYLLLLLFFFSSSASPFSLCIFSLPSASVGKFPLRVSAMPDLGNLSLSAPLTLSRCSSNDALDAPVKTLPNAFSSEPGSEPAFEPRVLKRTRGSLDRVKKPPIADKAFQDRLKDLPFLVGAPMMEECCFCCHFIYPGDDELLCSVRGCDARYHSECAKDAVGASNLKKFKCPQHVCFICKLKKQFRCVRCKIAFHSKCAPWSDSVVQLKDHPGQAVCWRHPSDWRLDRKTDASTSDISEVFCRLPLPFISEEFKIDFTWKDMDNKMEQPSPYVHIRRNIYLVKKKRSDADDGAGCTSCSSTSTCSDDCVCRVQCISCSKACRCSENCNNRPFRKEKKIKIVKTELCGWGVEAAETIDKGGFIIEYIGEVIDDALCEKRLWDMKYRGVQNFYMCEIRKDFTIDATFKGNTSRFLNHSCDPNCVLEKWQVDGETRVGVFAACSIEAGEPLTYDYRFVQFGPEVKCHCGAANCQGFLGTKKKIGKLDLYWGSKRKRTSKASCITLVTAV* 528
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g1883 527 SMART PostSET_3 480 496 IPR003616 -
Gso6g1883 527 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE ASHR3 131 522 - -
Gso6g1883 527 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 142 244 IPR013083 -
Gso6g1883 527 Pfam SET domain 368 473 IPR001214 GO:0005515
Gso6g1883 527 ProSiteProfiles AWS domain profile. 311 357 IPR006560 GO:0005634|GO:0018024
Gso6g1883 527 Gene3D SET domain 267 514 IPR046341 -
Gso6g1883 527 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 60 527 IPR025787 -
Gso6g1883 527 SMART set_7 357 480 IPR001214 GO:0005515
Gso6g1883 527 ProSiteProfiles SET domain profile. 357 474 IPR001214 GO:0005515
Gso6g1883 527 ProSiteProfiles Post-SET domain profile. 480 496 IPR003616 -
Gso6g1883 527 PANTHER SET DOMAIN PROTEINS 131 522 - -
Gso6g1883 527 SUPERFAMILY SET domain 274 486 IPR046341 -
Gso6g1883 527 CDD SET_ASHR3-like 358 496 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g1883 Gso-Chr6 27556787 27576362 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g1883 338 495 C2H2 Transcription Factor Family AT2G23740 37.989 4.10e-25 108
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Gso6g1883 SET 1.1e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g1883 - - gmx:100791481 1082.4