Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g1871 ATGGCTGCGTGGAAGAAGTTGGCAATTTTAGGGAAGGGTTCTTATGGTACGGTTTATCTTGCTACTGTTGCTCTTCCCCAAGAATGCAATGAGAAGGTTGTAGCAGTCAAGAGTTCGAGCCCTTTCTCTTTCTCAATTGCTTCAATGCAGAAGGAAAAAAGAATACTGGACTCATTCTTGGGTTGCAAGGAAATCCTTCAATGCTATTTTGACCAATTCACTGTCGAGAGAAATTATGTGACATACAATCTTTTCATGGAGTGTGCTCCTTATGGTTCTCTTCTTGGTTTAGTAAACAAGAAGGGGCCAATATCGGATAGTGAAGTAAGAGTCTACACTCGTATGCTTCTCAAAGGGCTTTCTTGCATTCATCGAAAAGGAGTCGTCCATTGTGATCTGAAACCGGACAACATCCTTCTCTTTCCTTCATCTGATGATCATGCAAGGTATCAACTGAAGATTGCTGATTTTGGGTTGTCCAAGACTAGAGAAGATGCAAATGCTGAGTATGGGAAGGTCAAGTTTAGAGGGACACCTTCTTACATGTCGCCAGAATCGGTCGTTGGTCAGATTGAACCAGCGTTAGATATATGGTCTCTTGGGTGCATTATAATCGAGATGATCACTGGATTCCGTGCATGGAAGAACCTGCGAACTAAAAAGGAGATAATGTTAAAGCTTTTTGTCCTTCAAGAAGCACCTGAAATACCCAATGGACTGAGTTGGGATTGCAAGAATTTCTTGAGCAAGTGTTTTGTGAAGGATCCTAGGCAGAGATGGACTGCTACAATGCTTCTCAACCATCCTTTCCTTTATCCAACATGTTACATGTGTAGTTCTTCTTTTTTCTCATATGATATTGTTAGTCATGTGCCCTTTAAGGAATAA 888 0.4122 MAAWKKLAILGKGSYGTVYLATVALPQECNEKVVAVKSSSPFSFSIASMQKEKRILDSFLGCKEILQCYFDQFTVERNYVTYNLFMECAPYGSLLGLVNKKGPISDSEVRVYTRMLLKGLSCIHRKGVVHCDLKPDNILLFPSSDDHARYQLKIADFGLSKTREDANAEYGKVKFRGTPSYMSPESVVGQIEPALDIWSLGCIIIEMITGFRAWKNLRTKKEIMLKLFVLQEAPEIPNGLSWDCKNFLSKCFVKDPRQRWTATMLLNHPFLYPTCYMCSSSFFSYDIVSHVPFKE* 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g1871 295 CDD STKc_MAPKKK 4 271 - -
Gso6g1871 295 PANTHER PROTEIN KINASE SUPERFAMILY PROTEIN 1 277 - -
Gso6g1871 295 Gene3D Transferase(Phosphotransferase) domain 1 1 286 - -
Gso6g1871 295 SUPERFAMILY Protein kinase-like (PK-like) 4 280 IPR011009 -
Gso6g1871 295 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 1 277 - -
Gso6g1871 295 ProSitePatterns Serine/Threonine protein kinases active-site signature. 128 140 IPR008271 GO:0004672|GO:0006468
Gso6g1871 295 ProSiteProfiles Protein kinase domain profile. 4 271 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso6g1871 295 SMART serkin_6 4 271 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso6g1871 295 ProSitePatterns Protein kinases ATP-binding region signature. 10 37 IPR017441 GO:0005524
Gso6g1871 295 Pfam Protein kinase domain 5 271 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g1871 Gso-Chr6 26364846 26365733 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g1871 4 271 MAP Kinase Kinase Kinase AT5G67080 42.960 1.35e-60 194
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Gso6g1871 Pkinase 6.3e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g1871 - - gmx:102664043 573.933