Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g1869 ATGGTGCAAACAAGGAAGTTCAGAGGTGTCAGACAGCGCCATTGGGGTTCATGGGTATCAGAAATTCGCCACCCACTTCTCAAGAGGAGGGTGTGGCTAGGCACGTTCGAAACTGCAGAAGAAGCAGCACGAGCCTACGACCAAGCTGCGATATTGATGAGCGGGCGAAACGCAAAAACCAACTTCCCAATAGTCCAAACCCCAGAGGGTGACCCAAAGACAACGCTAACACCAACCGATCACGAAACCCCATCGTCGTCCATGACCACCTCGAAGGAACTGGAAGAGATTCTTCACGCCAAGCTCAGAAAGTGCGGGAAGCTTCCGTCCCCTTCCATGACCTGCCTGAGGCTCGACCCCGAGAATTCCCACATCGGAGTGTGGCAGAAGCGCGCCGGCCAGCATTCCGACTCCAACTGGGTCATGATGGTTCCTCCCCTCGGAAAGAAGGGTGGTGCCAACGAAGGAGGTACTGGAGATGGTTCTTGTTCTAATAATCCCTCTTCGTTCTCTAAGTGCGATCCTGCCCCGCAAGTGGTGAGACAGGAGCTTCTAAGGACAGAGATGGACGAGGAAGAGAGAATTGCGCTACAAATGATAGAAGAACTCCTCGGCAGGAACTGCCCCATCACTAGCCCTTCTTTCAACAACTTATATTAA 660 0.5288 MVQTRKFRGVRQRHWGSWVSEIRHPLLKRRVWLGTFETAEEAARAYDQAAILMSGRNAKTNFPIVQTPEGDPKTTLTPTDHETPSSSMTTSKELEEILHAKLRKCGKLPSPSMTCLRLDPENSHIGVWQKRAGQHSDSNWVMMVPPLGKKGGANEGGTGDGSCSNNPSSFSKCDPAPQVVRQELLRTEMDEEERIALQMIEELLGRNCPITSPSFNNLY* 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g1869 219 MobiDBLite consensus disorder prediction 149 174 - -
Gso6g1869 219 ProSiteProfiles AP2/ERF domain profile. 6 63 IPR001471 GO:0003700|GO:0006355
Gso6g1869 219 SUPERFAMILY DNA-binding domain 6 64 IPR016177 GO:0003677
Gso6g1869 219 MobiDBLite consensus disorder prediction 158 174 - -
Gso6g1869 219 SMART rav1_2 6 69 IPR001471 GO:0003700|GO:0006355
Gso6g1869 219 PRINTS Ethylene responsive element binding protein signature 7 18 IPR001471 GO:0003700|GO:0006355
Gso6g1869 219 PRINTS Ethylene responsive element binding protein signature 29 45 IPR001471 GO:0003700|GO:0006355
Gso6g1869 219 PANTHER AP2-EREBP TRANSCRIPTION FACTOR 1 215 - -
Gso6g1869 219 Pfam AP2 domain 6 54 IPR001471 GO:0003700|GO:0006355
Gso6g1869 219 MobiDBLite consensus disorder prediction 62 91 - -
Gso6g1869 219 CDD AP2 6 65 IPR001471 GO:0003700|GO:0006355
Gso6g1869 219 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 1 215 - -
Gso6g1869 219 Gene3D AP2/ERF domain 5 65 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g1869 Gso-Chr6 26157616 26160295 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g1869 1 207 AP2-EREBP Transcription Factor Family AT1G15360 59.242 1.62e-72 217
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gso6g1869 AP2 1.1e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g1869 - - gmx:100819868 439.884