Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g1852 ATGTCGACATCGACGAACCTGGTGGTCCTGGACAATGGCGGTGGGCTAATAAAAGCAGGCATCGACGGCGAGCACGACCCCTTCGCCATAGTCCCAAACTGCCTTTACCGCCCCCCAACATCGAAGAAGTGGCTCCACCTCTACTCTGGCAATGAAGACCTCACCTCTGCCGCCATGCGCTACCCCGTGGACCGCGGCTACCTCATAAACCCGGACCTACAACACAAAATCTGGTCCCACCTCTTCTCCTCCGTCCTCCACACAAACCCTTCCAAATCCTCTCTCATCCTCACAGAGCCTCTATTCACAGCCCCCTCCATCCAACGCTCCATGGATGAACTCGTCTTCAAGGACTTTAACTTTTGGGCCCTCTACCTGGCCGATTCTGCCTCTATCGTCTACCTCTACAAGGCCAGCCGCAACAATGCCAACGGGATCCTCTCCAAGGCCCAACAAAGCCTCGTCGTGGACTTGGGCTTCTCCTTCACCCACACCTCCCCCGTCTTTCACAACTTCGCCCTCAACTACGCCATCAGGAGAATCGACCTCAGTGGCAAGGCCCTCACTAACTACCTCAAGGATCTCGTCTCCTTCCGCTCCGTCAACATCATGGAAGAGACTTTCATCATCAATGATGTCAAGGAGAAGCTCTGCGGCTTATGTTGTTCCCCCAACTATGATATCCTCCTTACTGAATTTGTTAAGTATCCAGATCAGGCACAACACTATCTTGCATTGAGGGAGTGTGGCCTTCCTTCTTCACCATCAGTGGATGCACCAGGGGATGTGAAATGCCTGGAAATTGCTAAGCAGCCAGAGGACAGGAAGATAGTTGATTTGACAAAAAATGAATTTGACTTGACAAACAAACAGTTTCTTGTGCCAAAGATGATATTTCGTCCTGCTGATTTGGGTCTATCACAAGTTGAGCTAGTTGAATGCATTGTACGTGTTGTTAATGTGTGTCATCCACATCTTCACCCTGTACTCTATGAAAGCATCATTTTAACTGGTGAAAGCACCTTATTTCCTCAGTTTGTTGAGAGACTCGAGAAGGAGCTTCGGCCTCTAGTTCCTAATGACTATCGTGTGAAGATAGCAACTCAAGAAGATCCCTTACTAGGTGTTTGGCGTGGAGGGTCACTGTTGGCATCAAGTCCAGACTTTGAAGCTATGTGTGTGACCAAGTCTGAGTATGAGGAGCTTGGTTCTGCTAGATGTCGCAAGAGATTCTTTCATTAA 1242 0.4936 MSTSTNLVVLDNGGGLIKAGIDGEHDPFAIVPNCLYRPPTSKKWLHLYSGNEDLTSAAMRYPVDRGYLINPDLQHKIWSHLFSSVLHTNPSKSSLILTEPLFTAPSIQRSMDELVFKDFNFWALYLADSASIVYLYKASRNNANGILSKAQQSLVVDLGFSFTHTSPVFHNFALNYAIRRIDLSGKALTNYLKDLVSFRSVNIMEETFIINDVKEKLCGLCCSPNYDILLTEFVKYPDQAQHYLALRECGLPSSPSVDAPGDVKCLEIAKQPEDRKIVDLTKNEFDLTNKQFLVPKMIFRPADLGLSQVELVECIVRVVNVCHPHLHPVLYESIILTGESTLFPQFVERLEKELRPLVPNDYRVKIATQEDPLLGVWRGGSLLASSPDFEAMCVTKSEYEELGSARCRKRFFH* 414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g1852 413 SUPERFAMILY Actin-like ATPase domain 5 133 IPR043129 -
Gso6g1852 413 Gene3D - 127 378 - -
Gso6g1852 413 Pfam Actin 5 412 IPR004000 -
Gso6g1852 413 Gene3D - 8 404 - -
Gso6g1852 413 PANTHER ACTIN 8 409 IPR004000 -
Gso6g1852 413 PANTHER ACTIN-RELATED PROTEIN 6 8 409 IPR030054 GO:0005634|GO:0006338
Gso6g1852 413 SUPERFAMILY Actin-like ATPase domain 152 412 IPR043129 -
Gso6g1852 413 Gene3D Actin; Chain A, domain 4 189 310 - -
Gso6g1852 413 Gene3D Actin; Chain A, domain 2 35 62 - -
Gso6g1852 413 SMART actin_3 5 412 IPR004000 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g1852 Gso-Chr6 24442735 24445766 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g1852 8 412 Cytoskeleton Gene Families AT3G12110 27.229 6.35e-52 176
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g1852 K11662 - gmx:100819827 661.373