Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g1838 ATGCTTCCATTTTCAATGGTTCTGTTTCTCTTTATAACCATTGTTCACTCAGGAGTTTATGGGGAGGAGAACGTGACCTTAGTGAGTGAAAAAGAGTCACTTGTTTCATTCATGTCAGGCATTTTTTCTGACCCCAAAAACGTTCTAAAAAGTTGGAAGTCCCCAAGTGTACATGTTTGCAATTGGTATGGTGTAAGATGCAACAATGCAAGTGACAACAAGATCATAGAGCTTGCTCTTAATGGAAGCTCACTTGGGGGCACTATTTCCCCTGCTCTTGCTAATCTTTCTTATTTGCAAATTCTTGATCTTTCTGACAATTTTTTGGTGGGTCACATTCCAAAAGAACTGGGCTATTTGATTCAGCTTCAACAACTCAGTTTATCAGGGAATTTTCTTCAAGGGGAAATTCCCTCTGAGTTGGGTTCATTTCACAACTTGTACTACCTTAACATGGGAAGTAATCAGCTTGAGGGTGAGGTTCCACCCTCACTTTTTTGCAATGGGTCTTCCACATTGAGGTATATAGACCTCTCTAACAATTCCTTGGGAGGACAAATACCCTTGAGTAATGAGTGTATCCTTAAAGAGCTTAGGTTCCTCTTACTTTGGTCAAACAATTTTGTAGGCCATGTTCCTTTAGCTCTTTCAAACTCCAGAGAACTGAAATGGTTTGACGTGGAATCAAATAGGTTGAGTGGGGAGTTACCATCTGAAATTGTAAGTAATTGGCCACAACTACAATTCCTCTACCTATCATATAATGGCTTTGTTAGCCATGATGGTAACACCAAACTTGAACCTTTCTTCTCTTCCTTGATGAATTTGTCTAACATGCAAGGCCTCGAATTGGCGGGAAATAATCTAGGAGGGAAGCTACCTCAAAATATTGGTGATCTTCTTCCTAGTAGCCTGTTACAACTTCACCTAGAAGACAATCTTATACATGGTTCTATACCTTCAAACATTGCAAACCTTGTCAATCTGACTCTTCTAAACTTTTCCAGCAACTTGCTAAATGGATCAATACCTCACAGCCTCTGCCAGATGGGGAAGCTAGAGCGAATTTATTTGTCAAATAATTCACTATCTGGGGAGATTCCTTCAACCCTTGGTGGCATTAGGCGTCTGGGGCTTCTTGACTTGTCAAGAAACAAGCTTTCTGGCTCAATACCAGACACTTTTGCTAACCTCACACAGTTAAGAAGGCTTTTACTTTATGACAACCAGCTTTCTGGAACCATCCCACCAAGTCTGGGAAAATGTGTCAATTTGGAGATTTTAGACCTATCCCACAACAAGATTTCAGGGTTGATCCCTAAGGAAGTTGCAGCCTTTACTAGCTTGAAACTCTACTTGAATTTATCAAGTAATAACTTAGATGGGCCTTTACCATTAGAGCTCTCCAAAATGGACATGGTGCTGGCTATTGACCTATCCATGAACAATCTCTCTGGCAGAATCCCACCACAGCTTGAAAGTTGCATAGCATTAGAGTACCTGAACCTTTCTGGAAACTCCTTAGAAGGCCCTCTACCGGATTCATTGGGCAAATTGGATTATATTCAAGCACTTGATGTGTCTTCAAATCAATTGACAGGGGTAATACCACAGTCCCTTCAGTTGTCCTTGTCCACTCTCAAGAAAGTTAATTTCTCTTCCAACAAATTCTCAGGGAGTATCTCAAACAAGGGAGCCTTTTCATCTTTTACCATAGACTCTTTCCTAGGAAATGATGGTCTTTGTGGCTCGGTAAAAGGCATGCAAAACTGCCACACGAAACCAAGGTATCATTTGGTTCTCCTCCTACTAATTCCAGTGTTACTAATTGGCACCCCCTTGCTGTGCCTGTGCATGCAGGGGTACCCCACCATAAAATGTTCAAAAGAAAGAATGCAAATGGCAATAGTTAGCAAAGGAGACTTTGATGATGAAGACGAGGAAACAAAGGAGCTCAAGTACCCAAGAATTTCATATAGACAACTCATTGAGGCCACAGGAGGCTTTAGTGCTTCAAGCCGAATTGGTTCAGGTCGATTTGGACAGGTCTACAAAGGAATTCTCCGAGATAACACACGAATAGCAGTGAAGGTGTTAGACACAGCAACAGCTGGTGATATTATTTCAGGGAGCTTCAGAAGGGAATGCCAAATCCTGACGAGGATGAGACACAGGAATTTAATAAGGATCATCACAATTTGCAGTAAAAAGGAGTTTAAGGCTCTTGTTCTTCCACTGATGCCAAATGGTAGTCTTGAGCGGCACTTATATCCGAGCCAGAGGTTAGATATGGTTCAGCTGGTGAGGATCTGCAGTGATGTAGCTGAGGGAATGGCCTATTTGCACCACTATTCTCCAGTTAGAGTAGTGCACTGTGATCTTAAGCCGAGCAATATACTACTTGATGACGATTTCACAGCTTTGGTAACTGATTTTGGTATCGCAAGGCTTGTAAAAAGTGATGACAACATGCCCACAAGTGACTCATCTTTCTGTTCAACACATGGCTTGTTATGTGGCTCCCTTGGCTACATAGCTCCTGAGTATGGAATGGGAAAACATGCATCAACTCAAGGTGATGTTTACAGTTTTGGTGTACTTGTGCTAGAAATAGTGACGGGTAGACGCCCAACAGATGTCCTTGTCCATGAAGGGTCTTGCTTGCATGAGTGGATTAAGAAACAATATCCACACGAGCTTGGTAACATTGTTGAACAAGCAATGCAAAGATGCTGCTCTTCTCCCTCTGGCATGCCTAATCAGTATCACAAATTTGGGCAAGATGTTATGTTGGAACTCATAGAGTTGGGGCTTCTCTGCACACACCACAATCCTTCAACAAGACCAAGCATGTTGGATGTAGCCCAAGAAATGGGAAAGTTGAAGGACTACCTTTCTCATCTATCATCTTCTCTGTTGAGGCTGACTGAAGATAAATTTAGCCAGAAAATAAATAACTAA 2961 0.4174 MLPFSMVLFLFITIVHSGVYGEENVTLVSEKESLVSFMSGIFSDPKNVLKSWKSPSVHVCNWYGVRCNNASDNKIIELALNGSSLGGTISPALANLSYLQILDLSDNFLVGHIPKELGYLIQLQQLSLSGNFLQGEIPSELGSFHNLYYLNMGSNQLEGEVPPSLFCNGSSTLRYIDLSNNSLGGQIPLSNECILKELRFLLLWSNNFVGHVPLALSNSRELKWFDVESNRLSGELPSEIVSNWPQLQFLYLSYNGFVSHDGNTKLEPFFSSLMNLSNMQGLELAGNNLGGKLPQNIGDLLPSSLLQLHLEDNLIHGSIPSNIANLVNLTLLNFSSNLLNGSIPHSLCQMGKLERIYLSNNSLSGEIPSTLGGIRRLGLLDLSRNKLSGSIPDTFANLTQLRRLLLYDNQLSGTIPPSLGKCVNLEILDLSHNKISGLIPKEVAAFTSLKLYLNLSSNNLDGPLPLELSKMDMVLAIDLSMNNLSGRIPPQLESCIALEYLNLSGNSLEGPLPDSLGKLDYIQALDVSSNQLTGVIPQSLQLSLSTLKKVNFSSNKFSGSISNKGAFSSFTIDSFLGNDGLCGSVKGMQNCHTKPRYHLVLLLLIPVLLIGTPLLCLCMQGYPTIKCSKERMQMAIVSKGDFDDEDEETKELKYPRISYRQLIEATGGFSASSRIGSGRFGQVYKGILRDNTRIAVKVLDTATAGDIISGSFRRECQILTRMRHRNLIRIITICSKKEFKALVLPLMPNGSLERHLYPSQRLDMVQLVRICSDVAEGMAYLHHYSPVRVVHCDLKPSNILLDDDFTALVTDFGIARLVKSDDNMPTSDSSFCSTHGLLCGSLGYIAPEYGMGKHASTQGDVYSFGVLVLEIVTGRRPTDVLVHEGSCLHEWIKKQYPHELGNIVEQAMQRCCSSPSGMPNQYHKFGQDVMLELIELGLLCTHHNPSTRPSMLDVAQEMGKLKDYLSHLSSSLLRLTEDKFSQKINN* 987
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g1838 986 PANTHER OS04G0122200 PROTEIN 20 962 - -
Gso6g1838 986 SMART serkin_6 669 965 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso6g1838 986 ProSitePatterns Protein kinases ATP-binding region signature. 675 697 IPR017441 GO:0005524
Gso6g1838 986 Gene3D Phosphorylase Kinase; domain 1 633 745 - -
Gso6g1838 986 ProSiteProfiles Leucine-rich repeat profile. 424 445 IPR001611 GO:0005515
Gso6g1838 986 Pfam Leucine Rich Repeat 498 519 IPR001611 GO:0005515
Gso6g1838 986 Pfam Leucine Rich Repeat 352 372 IPR001611 GO:0005515
Gso6g1838 986 CDD STKc_IRAK 675 961 - -
Gso6g1838 986 SUPERFAMILY L domain-like 29 260 - -
Gso6g1838 986 ProSiteProfiles Protein kinase domain profile. 669 965 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso6g1838 986 Pfam Leucine rich repeat N-terminal domain 29 68 IPR013210 -
Gso6g1838 986 SUPERFAMILY L domain-like 328 583 - -
Gso6g1838 986 SUPERFAMILY Protein kinase-like (PK-like) 649 956 IPR011009 -
Gso6g1838 986 Pfam Protein kinase domain 671 956 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso6g1838 986 ProSitePatterns Serine/Threonine protein kinases active-site signature. 789 801 IPR008271 GO:0004672|GO:0006468
Gso6g1838 986 Gene3D Ribonuclease Inhibitor 26 167 IPR032675 -
Gso6g1838 986 Gene3D Transferase(Phosphotransferase) domain 1 747 973 - -
Gso6g1838 986 SMART LRR_typ_2 276 300 IPR003591 -
Gso6g1838 986 SMART LRR_typ_2 326 350 IPR003591 -
Gso6g1838 986 SMART LRR_typ_2 374 397 IPR003591 -
Gso6g1838 986 SMART LRR_typ_2 398 422 IPR003591 -
Gso6g1838 986 SMART LRR_typ_2 423 445 IPR003591 -
Gso6g1838 986 SMART LRR_typ_2 96 120 IPR003591 -
Gso6g1838 986 SMART LRR_typ_2 144 168 IPR003591 -
Gso6g1838 986 Gene3D Ribonuclease Inhibitor 241 598 IPR032675 -
Gso6g1838 986 Pfam Leucine Rich repeats (2 copies) 399 438 IPR025875 -
Gso6g1838 986 Gene3D Ribonuclease Inhibitor 168 240 IPR032675 -
Gso6g1838 986 PANTHER LEUCINE-RICH RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN 20 962 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g1838 Gso-Chr6 23032156 23036431 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g1838 7 963 Receptor kinase-like Gene Family AT3G47110 34.336 1.07e-155 484
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Gso6g1838 Pkinase 2.9e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g1838 - - lang:109346572 1374.38