Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g1830 ATGGAGGGTGGTGGTGACGTTAAGGGTTGGGCGTTGGAGTTTCTTCTCCGGGCTCAGAACCCAGTCGTTCCCAGTAACCTAATTAAGAAAGTCATTCTAATAGTCCCCCTTTCAGACTTTTATTCCAGGCTCAAGAAGACGCTTCTTCTCCGAGCCCTTCAAGATCACTTGTTCGCTGTCTCTGTCCCTGAGTCCGTTCTCGAAACCCTCGAGCAAGTCGAGGAACTCCACCGCCTCGGCGATGACGACGACGGAGCTCTGGTCACCACCTCATCCGCCATGAGCGCCGCCTACTGTGCCGTCGCGGTGGAGTGCACTCTCAAGCACCTGCTGCTGGAGCTCCACAACAACCCTGCTTATCTCGGCGCGGTGAACAGGATATGGCGCGGTAGGGTTCGGCTCATGAGCGGTTCCGGGGAGGGGAGCCTCCTGCTCTCGCCAGAGCTGGAGCGGTGGAGAACCGACATTGAAGCTTCCCTTCTGGATTCGTCGGTGAGGGAGAGGTTGGCCTCCATTGATACAAGAAGGGATGCCGTCTTCAAGCTCCGGGATTATTTGAAGGAAGCTTGGACCGATTTGGGGCCTTCATTTCTTGAGCGAGCGGCGTTGGCGCATATAAACAACAATGCCCTAGCCGCGAATCACTCTGAGGATTCTCAACAGCCGGAGAGAGAAATTGAGAAGTGCACTGCTGCTCCTGCTGAGGAAGTGCATCCCTCAACAGATGTTGAGATCCAAAAGGTTGGGGAGTGCGGTTCTGTGGAGTTGCAAAAGTTGGCTGAGGATTCTCTACTTGATTTGTTGGAAGTGAATGAGGAGGCATCGATGGAAGAACAAAGTAGAGATGTAGATGTACCTTGCCCACATGCTATTAATGACAATGAGGCTGATCTGATGGAAAAGGATCAAACTTCTGCCGAGGAAGTGCTTCCCTCAACAACTGTTGAGGTCCAAAAGGTTAGGGAATGTGGTTCCGTGGAGTTGCAAAAGTTGGCTAAGGATTCTCTACTTAATTCGTTGGAAGTGAATGAGGAGGCACATATTGAAAGTAGAGATGCAGATGTACCTTGCCCACTTGTTATTAGTAACAATGAGGCTGATCTGATGGAAAAGGATCAAACTTCTATCCCTCATAATCATGACCATAAGCCAAGTTTAATGGAAAGAAATAGTTCTGCTCGTATTTATGAGTGGGATGATTCAATAGATGGCTTGGAGGATGGAACATCAGATCATGCAACTAGATTTAATTTGCCTAGTCCCAAGGGGAGAAAAGTTTCTCCATTGAATAAGTACAAACCTGCAAACATTACAAAGAGGAGAAAAGTGAAAAAATGGAGTCAGTTGGAAGAGGAGACTCTAAGGACTGCTGTAGACAAGTTTGGCAGGGGAAATTGGAAGTTAATCCTAGATTCTCACAAAGATATATTTGAAGAGAGAACTGAAGTTGATTTGAAGGACAAGTGGAGAAATATGACGTAA 1482 0.4804 MEGGGDVKGWALEFLLRAQNPVVPSNLIKKVILIVPLSDFYSRLKKTLLLRALQDHLFAVSVPESVLETLEQVEELHRLGDDDDGALVTTSSAMSAAYCAVAVECTLKHLLLELHNNPAYLGAVNRIWRGRVRLMSGSGEGSLLLSPELERWRTDIEASLLDSSVRERLASIDTRRDAVFKLRDYLKEAWTDLGPSFLERAALAHINNNALAANHSEDSQQPEREIEKCTAAPAEEVHPSTDVEIQKVGECGSVELQKLAEDSLLDLLEVNEEASMEEQSRDVDVPCPHAINDNEADLMEKDQTSAEEVLPSTTVEVQKVRECGSVELQKLAKDSLLNSLEVNEEAHIESRDADVPCPLVISNNEADLMEKDQTSIPHNHDHKPSLMERNSSARIYEWDDSIDGLEDGTSDHATRFNLPSPKGRKVSPLNKYKPANITKRRKVKKWSQLEEETLRTAVDKFGRGNWKLILDSHKDIFEERTEVDLKDKWRNMT* 494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g1830 493 CDD SANT_TRF 444 493 - -
Gso6g1830 493 Pfam Myb-like DNA-binding domain 444 492 IPR001005 -
Gso6g1830 493 SUPERFAMILY Homeodomain-like 440 492 IPR009057 -
Gso6g1830 493 Gene3D - 435 493 - -
Gso6g1830 493 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 438 493 IPR017930 -
Gso6g1830 493 PANTHER MYB TRANSCRIPTION FACTOR 6 493 - -
Gso6g1830 493 PANTHER MYB TRANSCRIPTION FACTOR 6 493 - -
Gso6g1830 493 ProSiteProfiles Myb-like domain profile. 438 493 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g1830 Gso-Chr6 22508772 22515204 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g1830 406 492 Single Myb Histone (SMH) Gene Family AT1G15720 41.379 6.28e-11 62.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Gso6g1830 Myb_DNA-binding 9.4e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g1830 - K11111 gmx:100777809 965.296