Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g1829 ATGATTGAGGTTCCATTGTCTTACCATAGACAGTGGAGGCCACATTATCCGACGTATGTTTTGTTTCAGCATAATGGAACCACACATTTTATTAGGCTTCGCAGATATGGTAGCCGATACTTTTTTTCTGATGGCCTCAAAGACTTTAGAAGAACTCACGGAATTGACGACAGCGTCATCCTGCGGTTTTTTGGTGGTGACAAAAATACCACCTTCAAGGTGGATGTCATTGGACCTATCCTTGGGCAGCTCCGTCCAAGACTAATGGCACATATTGCTGACAAGATAAAAAACATTGATGGATCTAAAGAAACTCTAAAACTTACTGTAAGGATAATTGAGCTCTGGTTTGTTGGGACACCGGGCAGGTCTGAACAAGCTGAGATGATCATTGTTGACTCTGACGGTGATCAGATCCACGTGGTCTGTAAGCAAGACCAGTTAAAAGCATGGAAAATGGATTTGAAGGAAGGTTGTACTTATGTGATGCACAATTTTAGAGTCACTAAGAATGATAGACAGTACATAGTTTGTGATCATCCATATAAATTGATATTTATTGGAGTTACAGTTGTCAGACAGTGTGAATTAGATGGCCTTCCTTTAAAAAAGTATAGATTTGTAGATTTTTCAGATGTCATTGCTGGCCAATTACAGCCTGACCTATTAGTAGACATCATTGGTGTTGTCGGCGAGTTTGTCTTTCATCATATTTCACCTATAAGTAAGAGAGTTGTTTTTAAGCTTATGAATTTGAGTAACCAATTGGTGTCTTGCACTCTATGGGACGATTATTGTGTCCAATTTCTGGAATATTTGGATCACCATGAGAGTGAAGGGCCTATTATTGTGTTGTTGACCAATGCCAGAATTAAAGAGGGCCAAGGATCCTATCCATGCTCGGTTAGCAATTCTTTGAAGGCTTCTAAATTGACTATTAATGAGCCACTGACACCAATTGAAGAATTCAATCAGAAGTATTTGCCTCATTGCTATAAGAAAACAAATGTCTATCCAGAACCATTTGTGTGCCCATGTGGCAAACATAATGATCGAGCTGTGCTTAGATATAGAGTTGAAGTGATGGTCAATTATAAAGATCAAAACACAAAATTTCTCCTGTGGGATCGTGAATGCACTGAATTGATTGGGCAGTCAGCTGATGAAGTCAATACCCTCAAAATAGAAGATGGTGATCTAGATTTAAATGCCTCCCCAAAAGCACTTGATAAACTACTGGGTCATCTGCTCGCCTTCAAAGTCAAAATCCAGCCGCAGTATAAAAATTCTACTGTTTTGAAGTGCTCCAGTGACTTAGCTTTAATTAATGATGTTCTGGACATGTTTCCTGATGCTGAGACATGTTCAAAGATTAAAGCTACAACACCGTTTGATTCCAATGATCCTGTCCACGATGAATGTCAATCCATTTCTATAACAGTAGACCATGATCCACTTATTGGACTTCCCTTGACACCAACAAAATGA 1488 0.3911 MIEVPLSYHRQWRPHYPTYVLFQHNGTTHFIRLRRYGSRYFFSDGLKDFRRTHGIDDSVILRFFGGDKNTTFKVDVIGPILGQLRPRLMAHIADKIKNIDGSKETLKLTVRIIELWFVGTPGRSEQAEMIIVDSDGDQIHVVCKQDQLKAWKMDLKEGCTYVMHNFRVTKNDRQYIVCDHPYKLIFIGVTVVRQCELDGLPLKKYRFVDFSDVIAGQLQPDLLVDIIGVVGEFVFHHISPISKRVVFKLMNLSNQLVSCTLWDDYCVQFLEYLDHHESEGPIIVLLTNARIKEGQGSYPCSVSNSLKASKLTINEPLTPIEEFNQKYLPHCYKKTNVYPEPFVCPCGKHNDRAVLRYRVEVMVNYKDQNTKFLLWDRECTELIGQSADEVNTLKIEDGDLDLNASPKALDKLLGHLLAFKVKIQPQYKNSTVLKCSSDLALINDVLDMFPDAETCSKIKATTPFDSNDPVHDECQSISITVDHDPLIGLPLTPTK* 496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g1829 495 PANTHER REPLICATION FACTOR A 1, RFA1 100 401 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Gso6g1829 495 SUPERFAMILY Nucleic acid-binding proteins 95 195 IPR012340 -
Gso6g1829 495 PANTHER RPA1 DOMAIN PROTEIN, PUTATIVE-RELATED 100 401 - -
Gso6g1829 495 SUPERFAMILY DNA-binding pseudobarrel domain 3 78 IPR015300 -
Gso6g1829 495 CDD RPA1_DBD_B_like 225 325 - -
Gso6g1829 495 Pfam Domain of unknown function DUF223 128 218 IPR003871 -
Gso6g1829 495 CDD RPA1_DBD_A_like 107 192 - -
Gso6g1829 495 SUPERFAMILY Nucleic acid-binding proteins 205 327 IPR012340 -
Gso6g1829 495 Gene3D - 93 195 IPR012340 -
Gso6g1829 495 Gene3D - 199 335 IPR012340 -
Gso6g1829 495 SUPERFAMILY Nucleic acid-binding proteins 329 429 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g1829 Gso-Chr6 22481756 22487856 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g1829 131 327 Core DNA Replication Machinery Family AT5G45400 21.463 1.45e-06 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g1829 - - gsj:114416011 1023.08