Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g1807 ATGGCTTCATCTTCCTCCAACGGCAGTTCCAGCGGAAGCAAGAGTTGGGACATCGACGGCGACCTCGCCGGTTTCGGCTACAAAGTCCGTTCATCGGAGCTGCAACACGTGGCAGAAAACATGGAGCGTTTAGAGAACGTGATGGACATTGTGAACTCATCAACCAACAATAACATATCTCAGCTGGCCTCCGATACAGTCTTCTACAACCCCTCCGACATAGGTTCCTGGGTCGACACGCTTCTCTCCGAGTTCGACCAAACGGCGTCGTTGCCCTACGATTTCTCGGATTTTCTCGATCTCGACACGGATCAGAATCAAAACCACAAACCAACGCTGGTAACAATGGAAGAAGACTCAGGGATAAGACTCGTCCACACGCTGATGACCTGTGCGGATTCCGTGCAACGTGGTGACCTCGCATTCGCGGGCTCCCTCATCGAGAACATGCAGGGGCTGTTGGCTCACGTGAACACCAACATCGGAATCGGTAAAGTCGCTGGATATTTCATCGATGCCTTGCGCCGTCGCATCTTAGGGCAAGGCGTGTTTCAAACGTTGTCGTCGTCCTCGTATCCGTACGAGGACAACGTACTCTACCACCACTACTACGAGGCCTGCCCTTACTTGAAGTTCGCGCACTTCACGGCGAATCAGGCTATTTTAGAAGCTTTCAACGGTCATGATTGTGTCCACGTGATTGACTTCAATCTCATGCAGGGGCTCCAGTGGCCCGCGCTGATTCAGGCCCTGGCGCTTCGGCCCGGTGGGCCTCCGTTGTTGAGGCTCACGGGCATTGGGCCTCCCTCATCTGACAACCGCGACACGCTCCGCGAAATCGGGCTCAGGCTCGCTGAGCTGGCGCGGTCGGTTAATGTTAGATTTGCATTTCGTGGCGTGGCGGCGTGGCGACTCGAAGACGTGAAGCCGTGGATGCTGCAGGTGAATCCGAACGAAGCCGTGGCGGTTAACTCCATCATGCAGTTGCATCGGCTTCTTGCTTCGGACTCCGATCCAATAGGTTCGGGCATCGAAACCGTGCTGGGTTGGATCCGAAGCTTGAACCCGAAGATTATTTCCGTTGTAGAACAGGAAGCGAACCACAACCAGGACCGGTTCTTGGAGCGGTTCACGGAAGCGTTGCATTACTACTCGACCGTTTTCGACTCGCTGGAGGCGTGTCCGGTCGAACCGGACAAGGCACTTGCGGAGATGTACCTGCAAAGGGAGATATGCAACGTGGTGAGCAGCGAGGGACCGGCGCGAGTCGAGAGGCACGAGCCGCTGGCTAAGTGGAGGGAGCGGCTCGAGAAAGCCGGCTTCAAGCCGCTGCATTTGGGGTCAAACGCGTACAAGCAAGCCAGCATGTTGCTGACTCTTTTCTCTGCTGAAGGGTACTCCGTGGAAGAGAATCAAGGATGCTTGACTTTGGGGTGGCATAGCCGCCCTCTCATTGCGGCTTCGGCTTGGCAAGCTGCGCCGATGCAGGACAGGGAAACGCTGCGTTTCGAGCAATGA 1518 0.558 MASSSSNGSSSGSKSWDIDGDLAGFGYKVRSSELQHVAENMERLENVMDIVNSSTNNNISQLASDTVFYNPSDIGSWVDTLLSEFDQTASLPYDFSDFLDLDTDQNQNHKPTLVTMEEDSGIRLVHTLMTCADSVQRGDLAFAGSLIENMQGLLAHVNTNIGIGKVAGYFIDALRRRILGQGVFQTLSSSSYPYEDNVLYHHYYEACPYLKFAHFTANQAILEAFNGHDCVHVIDFNLMQGLQWPALIQALALRPGGPPLLRLTGIGPPSSDNRDTLREIGLRLAELARSVNVRFAFRGVAAWRLEDVKPWMLQVNPNEAVAVNSIMQLHRLLASDSDPIGSGIETVLGWIRSLNPKIISVVEQEANHNQDRFLERFTEALHYYSTVFDSLEACPVEPDKALAEMYLQREICNVVSSEGPARVERHEPLAKWRERLEKAGFKPLHLGSNAYKQASMLLTLFSAEGYSVEENQGCLTLGWHSRPLIAASAWQAAPMQDRETLRFEQ* 506
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g1807 505 PANTHER OS05G0574900 PROTEIN 7 495 - -
Gso6g1807 505 Gene3D - 17 85 IPR038088 -
Gso6g1807 505 ProSiteProfiles GRAS family profile. 115 491 IPR005202 -
Gso6g1807 505 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 7 495 IPR005202 -
Gso6g1807 505 Pfam GRAS domain family 124 491 IPR005202 -
Gso6g1807 505 Pfam Transcriptional regulator DELLA protein N terminal 19 89 IPR021914 -
Gso6g1807 505 SMART DELLA_2 19 95 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g1807 Gso-Chr6 21568068 21570183 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g1807 18 491 GRAS Transcription Factor Family AT1G14920 47.399 9.09e-159 460
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Gso6g1807 GRAS 6.6e-127 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g1807 K14494 - gmx:100814551 981.859