Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g1805 ATGAAGGATCCAGAGGAGCACCAAGTGAAGTCTAGAATGCCTCTTCAGAAATCTGCAGAACGTAGAAGAAGGTGCAGGAGAAGGAGCCAGTGCAAGATAGAGAAATTGCAAGAAGCAGAACTTGATTCACACCTTGGTTTCTCTTCTGCCACTTGCAAGAGTCTTGTGTTTCATCAAAGGCCTGGCTTTGGCCAACTTGGTACTAAGTGTGTCATCAAAGCTAACCACTTCCTTGCAGATATATCAGTTTCTGACTTGAGCCATTACAATGTTATAATAACACCTGAAGTCACTTCTCGTAAAACAAGCAAGGCTATCATAGCAGAGTTGGTGAGGCTTCACAGGAACACTGAATTAGCCACTAGGCTCCCTGTGTATGATGGAGGGAGAAACCTTTACACGGCTGGTTTGCTTCCTTTTACATACAAAGAGTTCAATGTAACATTGAGTGAGAATGATGATGTTACTTGTGGTACCAGGGAAAGGGAGTTTAAGGTGGTAATCAAGTTTGCAACTCATGTTAGCATGCATCAGCTACGAGAGCTTCTTAGCGGGAAACAAGTGAAGAATCCGCAGGAAGCTATAAGCGTTTTTGACATTGTGTTAAGGGAGCTTGCGGCTCAGAGTTACGTGTCCATTGGGAGGTTTCTGTATTCTCCTGATGTAAGAAAACCACAGCAGTTGGGTGGTGGTCTTGAATCATGGAGGGGCTTCTATCAGAGTATAAGGCCTACTCAGATGGGATTGTCGCTTAACATTGATATGTCATCAATGGCATTTATCGAACCACTACCTGTGATTGACTTTGTTGCTCAAATTTTGGGAAAAGATGTTCACTCAAAGCCGTTGTTGGATGCAGATCGTGTCAAGATCAAAAAGGCCCTAAGAGGTGTAAAAGTTGAAGTTACACATAGAGGAAATTTTCGAAGGAAGTATAGAATATCAGGACTGACTTCACAGCCTACAAGGGAGCTTAATTTCCCTCTTGATGACCAAATGAACATGAAATCAGTAGTTGATTATTTTCAAGAAATGTATGGATTTACAATCAAATATTCTCATCTACCTTGCCTTCAAGTAGGAAGTCAAAGGAAGGTGAACTATTTGCCAATGGAGGCATGCAAGATAGTTGGGGGCCAGAGATATACAAAAGGGCTAAATGAAAAGCAGATAACTTCTCTGCTGAAGGTCTCATGTCAAAGGCCCCGCGAACAAGAGACAGACATTTTACAGACAATTCAACAAAACAATTATGAGAATAATCCCTATGCAAAGGAGTTTGGCATCAGCATAGACAGCAAGCTTGCATCAGTTGAGGCTCGGGTTCTTCCGGCTCCATGGTTGAAATATCATGACACTGGAAGAGAGAAAGAATACTTGCCACAAGTTGGTCAGTGGAATATGATGAACAAGAAAGTTATAAATGGAAGTACTGTAAGATATTGGGCATGTATCAACTTCTCACGAAGTGTACAGGAAAGTGCAGCTCGTGGATTTTGCCAACAGTTAGTTCAGATGTGCCAAATCTCAGGCATGGAATTCAGTCAGGACCCTGCGATTCCTATACATTCGGCTAGACCAGATCAGGTAAAGAAGGCTTTGAAGTATGTACATTCTGCTGTTATAGACAAACTTGATGGGAAAGAGCTAGAGTTGCTGATTGCCCTTCTTCCAGACAATAATGGCTCTTTGTATGGTGATCTCAAAAGAATCTGCGAAACAGATCTGGGGTTGATTTCTCAATGCTGCCTTACAAAACATGTATTCAAGATCAATAGACAGTACCTGGCTAACGTGGCACTAAAAATCAATGTCAAGATGGGAGGAAGAAACACAGTACTTTTGGATGCTTTAAGTTGGAGGATTCCACTGGTTAGTGATATTCCAACAATAATATTTGGAGCTGATGTAACTCATCCAGAATCAGGAGAGGATTCTTGTCCATCCATTGCTGCTGTTGTAGCCTCCCAGGACTGGCCTGAAGTAACAAAGTATGCAGGGTTGGTTTGTGCTCAGCCTCATCGAGAAGAACTAATTCAAGATCTTTTCCGATGTTGGAAAGATCCACAGAGGGGTGTAATGTACGGTGGTATGATCAGGGAGCTTTTACTATCATTTAAGAAGGCAACTGGACAAAAACCATTGAGAATAATCTTTTACAGGGATGGGGTAAGTGAGGGACAGTTCTACCAGGTTTTGCTATATGAGCTTGATGCCATACGCAAGGCTTGTGCATCTTTGGAACCTAGTTACCAACCTCCAGTAACATTTGTTATTGTTCAAAAACGGCATCACACTAGACTCTTCGCAAACAATCATGATGACAGAAATAGCACTGATAAGAGTGGGAATATCTTACCTGGTACTGTGGTAGATTCTAAGATCTGTCATCCTTCGGAATTCGACTTCTACTTGTGCAGTCATGCAGGAATTCAGGGTACAAGTAGACCAGCACACTATCACGTCCTCTGGGACGAGAACAATTTCACTGCAGATGAGATTCAGTCTCTAACCAACAATTTGTGCTACACTTATGCAAGATGTACGCGGTCTGTTTCAGTAGTGCCTCCAGCATACTATGCTCATCTAGCAGCCTACAGGGCTCGATTCTACATGGAACCTGATGTTGCTGAGATTTCAAAACTGCGAGGAACAAGATCGAAAGAAGGGCCTGTTCGGGCACTGCCTGCTCTGAAAGAGAAGGTGAAGAATGTTATGTTTTACTGTTGA 2730 0.4242 MKDPEEHQVKSRMPLQKSAERRRRCRRRSQCKIEKLQEAELDSHLGFSSATCKSLVFHQRPGFGQLGTKCVIKANHFLADISVSDLSHYNVIITPEVTSRKTSKAIIAELVRLHRNTELATRLPVYDGGRNLYTAGLLPFTYKEFNVTLSENDDVTCGTREREFKVVIKFATHVSMHQLRELLSGKQVKNPQEAISVFDIVLRELAAQSYVSIGRFLYSPDVRKPQQLGGGLESWRGFYQSIRPTQMGLSLNIDMSSMAFIEPLPVIDFVAQILGKDVHSKPLLDADRVKIKKALRGVKVEVTHRGNFRRKYRISGLTSQPTRELNFPLDDQMNMKSVVDYFQEMYGFTIKYSHLPCLQVGSQRKVNYLPMEACKIVGGQRYTKGLNEKQITSLLKVSCQRPREQETDILQTIQQNNYENNPYAKEFGISIDSKLASVEARVLPAPWLKYHDTGREKEYLPQVGQWNMMNKKVINGSTVRYWACINFSRSVQESAARGFCQQLVQMCQISGMEFSQDPAIPIHSARPDQVKKALKYVHSAVIDKLDGKELELLIALLPDNNGSLYGDLKRICETDLGLISQCCLTKHVFKINRQYLANVALKINVKMGGRNTVLLDALSWRIPLVSDIPTIIFGADVTHPESGEDSCPSIAAVVASQDWPEVTKYAGLVCAQPHREELIQDLFRCWKDPQRGVMYGGMIRELLLSFKKATGQKPLRIIFYRDGVSEGQFYQVLLYELDAIRKACASLEPSYQPPVTFVIVQKRHHTRLFANNHDDRNSTDKSGNILPGTVVDSKICHPSEFDFYLCSHAGIQGTSRPAHYHVLWDENNFTADEIQSLTNNLCYTYARCTRSVSVVPPAYYAHLAAYRARFYMEPDVAEISKLRGTRSKEGPVRALPALKEKVKNVMFYC* 910
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g1805 909 Pfam Mid domain of argonaute 461 538 IPR032473 -
Gso6g1805 909 SMART PAZ_2_a_3 268 400 IPR003100 GO:0005515
Gso6g1805 909 SMART Piwi_a_2 552 873 IPR003165 GO:0003676
Gso6g1805 909 Pfam Argonaute linker 2 domain 406 450 IPR032472 -
Gso6g1805 909 SMART DUF1785_2 211 263 IPR014811 -
Gso6g1805 909 Gene3D - 442 615 - -
Gso6g1805 909 CDD Piwi_ago-like 422 872 IPR045246 -
Gso6g1805 909 Gene3D - 621 909 IPR036397 GO:0003676
Gso6g1805 909 MobiDBLite consensus disorder prediction 1 23 - -
Gso6g1805 909 CDD PAZ_argonaute_like 263 377 - -
Gso6g1805 909 SUPERFAMILY Ribonuclease H-like 542 874 IPR012337 -
Gso6g1805 909 MobiDBLite consensus disorder prediction 1 18 - -
Gso6g1805 909 Pfam PAZ domain 268 394 IPR003100 GO:0005515
Gso6g1805 909 Pfam Argonaute linker 1 domain 212 261 IPR014811 -
Gso6g1805 909 ProSiteProfiles Piwi domain profile. 552 873 IPR003165 GO:0003676
Gso6g1805 909 Gene3D paz domain 258 382 - -
Gso6g1805 909 ProSiteProfiles PAZ domain profile. 264 378 IPR003100 GO:0005515
Gso6g1805 909 PANTHER PROTEIN ARGONAUTE 10 16 908 - -
Gso6g1805 909 Pfam N-terminal domain of argonaute 69 202 IPR032474 -
Gso6g1805 909 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 16 908 - -
Gso6g1805 909 SUPERFAMILY PAZ domain 259 418 IPR036085 GO:0005515
Gso6g1805 909 Pfam Piwi domain 553 872 IPR003165 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g1805 Gso-Chr6 21487351 21504296 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g1805 57 909 Eukaryotic Initiation Factors Gene Family AT5G43810 73.984 0.0 1382
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g1805 K11593 - gmx:100813485 1808.88
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g1257 4 32013288 32028454 Gso6g1805 6 21487351 21504296 GST
Gso17g1005 17 9437225 9455110 Gso6g1805 6 21487351 21504296 PCT