Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g1804 ATGCCATCACAAGCAGAGCTAAGCATGATGGATTACAAGCCCTACAGCTACTCCACACTGCTGAAATCATTTTTAGATCAAACTGAAACTGATCAGACCTACAAGCTTGAAGAGTTCCTCTCTCGCTTAGAGGAAGAACGTGTCAAGATTGATGCCTTCAAGCGCGAGCTTCCTCTCTGCATGCAACTCCTCACCAACGCTGTGGAGGCTTCAAGGCAGCAACTACAAGCCTTCAGATCAAACCAAGGAACGAGGCCAGTTCTGGAAGAATTCATGCCAATATTAAAGCATCCAAACTCTCAAGAAAGCGCTGAAAAAACATCAAACATATCTGACAAGGCGAATTGGATGACATCAGCTCAACTATGGAGCCAAGCAAGTGAAGGAACCAAACCACAATCCACAATTACATCATTACCTAAAGAAGGTGCTGATATTGGCTTTAGCGTGAGCCCGAAGCTAGCCCTAGACAACAAACATAGGAATGGGGGAGCCTTTTTACCATTCTCAAAAGAACGAAACTCGTGTCAAGGATTAAGGGGTCTTCCTGAGTTGGCCCTTGCATCTCCTGAGAAAGAAATTGAGGAAAATAAGTGTGAATTAGAGGCAGAGAAATGTTCGAAAAGGGAGAATCCAGGCAAAGGAGGGAGTTGTGAAGGGGTTAATGTTGATCAGGGAAAAAGTGCTTCAGTTGCATCTGAGGCACAAACAGCAAATACTACCACCACCACAACTAACACTAGTGGCCAAACTCATAGGAAAGCAAGAAGGTGTTGGTCACCGGATTTGCACCGTCGATTTGTTAATGCTCTTCAGATGCTTGGTGGATCTCAAGTGGCCACCCCAAAACAGATTAGGGAGCTGATGAAGGTTGACGGTTTGACCAATGATGAAGTTAAAAGCCATCTCCAGAAATATAGGCTTCACACTAGAAGACCCAGTCCGAGCCTACATACCGGAGGACCAACACCCCAGCTTGTAGTCCTTGGAGGAATTTGGGTGCCACCGGAATATGCCACAACTACAGCAGCCATGACAAATTCCGGTGACCCCACACTCTATGGCCCACATCCTACCTCACAAGTGGCACCACCACACTACTGTGCAGCCACCCAAATGCCCCAAGAATTCTATAACTCAGCGTTGCCGTTATCGTTGCTGCCACCACCACATGACTACACCCTTCATCATCATCATTTTCACATGTACAAGACAGCAGCACAGACACAAAACTCTCCGGAGTCCGATATTCGGAGCAGTGGCGACCGGTCAGAGAGCATTGTGGATGGGAAGTCGGAGAGTGGTAAATGGAATGGAGAGAGTGGAGAGAAGAAAGGGTTGGCAGCACTAAGAGATCAAGAAGGGGAAGAGAGCACTGGAAGTGAGATTACTCTTAAATTCTAG 1404 0.4679 MPSQAELSMMDYKPYSYSTLLKSFLDQTETDQTYKLEEFLSRLEEERVKIDAFKRELPLCMQLLTNAVEASRQQLQAFRSNQGTRPVLEEFMPILKHPNSQESAEKTSNISDKANWMTSAQLWSQASEGTKPQSTITSLPKEGADIGFSVSPKLALDNKHRNGGAFLPFSKERNSCQGLRGLPELALASPEKEIEENKCELEAEKCSKRENPGKGGSCEGVNVDQGKSASVASEAQTANTTTTTTNTSGQTHRKARRCWSPDLHRRFVNALQMLGGSQVATPKQIRELMKVDGLTNDEVKSHLQKYRLHTRRPSPSLHTGGPTPQLVVLGGIWVPPEYATTTAAMTNSGDPTLYGPHPTSQVAPPHYCAATQMPQEFYNSALPLSLLPPPHDYTLHHHHFHMYKTAAQTQNSPESDIRSSGDRSESIVDGKSESGKWNGESGEKKGLAALRDQEGEESTGSEITLKF* 468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g1804 467 Coils Coil 61 81 - -
Gso6g1804 467 MobiDBLite consensus disorder prediction 229 255 - -
Gso6g1804 467 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 254 309 IPR006447 GO:0003677
Gso6g1804 467 MobiDBLite consensus disorder prediction 418 461 - -
Gso6g1804 467 Coils Coil 36 56 - -
Gso6g1804 467 MobiDBLite consensus disorder prediction 406 467 - -
Gso6g1804 467 MobiDBLite consensus disorder prediction 229 254 - -
Gso6g1804 467 SUPERFAMILY Homeodomain-like 251 312 IPR009057 -
Gso6g1804 467 Gene3D - 253 311 - -
Gso6g1804 467 Pfam Myb-like DNA-binding domain 256 307 IPR001005 -
Gso6g1804 467 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 467 IPR044787 GO:0003700|GO:0006355
Gso6g1804 467 PANTHER MYB-LIKE TRANSCRIPTION FACTOR FAMILY PROTEIN 1 467 - -
Gso6g1804 467 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 251 311 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g1804 Gso-Chr6 21347798 21351288 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g1804 1 467 G2-like Transcription Factor Family AT2G03500 50.713 3.79e-124 367
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Gso6g1804 Myb_DNA-binding 1e-05 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g1804 - - gmx:100809196 899.427
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g1260 4 32332617 32335802 Gso6g1804 6 21347798 21351288 GST
Gso17g1007 17 9473261 9476690 Gso6g1804 6 21347798 21351288 PCT
Gso6g1804 6 21347798 21351288 Gso17g1007 17 9473261 9476690 PCT