Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g1787 ATGCAATCTCAAAGTTCAGATACGTTTCCCTCTCACAATCGCAATGACCCAATTTCCTATTATGACCCAGCATTTTACTACTACAATAGCAGACCCTTTTTCATTGACTCTGAAAGCAACCCAACATCAAAACAAGAAAACAATAACAACAACTGTGACCTTGTTCCTTCTCCTCCTCCTCCTTTGTCCTTTTTCCACTTTCCTTCTCCAACCTTTGAAGATACTCAAAATCAAATTTTCCTCGAACAACGCCACGATTTTCTCCTTCAGTTTTACCATCAACCTCTGCCTCAAGACCCCGAGCCTCAACCTGTTATTACCACCATGGATCTTTCTGTTAAAAAGAGTGATCAGATCCAAAGAAAAAGAGTACCTGGCAAGAGAGATAGGCACAGCAAGATCAACACTGCAAGAGGGTTGAGAGATCGGAGAATGAGACTTTCCCTTGAAGTTGCAAAGAGGTTTTTTGGCCTTCAAGATATGCTGAACTTTGACAAAGCAAGCAAGACTGTGGAGTGGTTACTGAACCAAGCAAAAGTTGAAATCAATCGACTAGTGAAAGAGAAACAGAAGCAGCAGCAGCAGCAGAAGAAGAAGAAGGAGAATGATCATCATTATTATCAAAGTTGTAGCAGTGCTAGTTCGGAATGTGATCAAGAAGGTGTGTCTTGTCTTGATGAGGTTGTGGTGGGTGGAGATCAAGAACAACAACAAGAGAGGGTCGAAAAAGTTGTGAAGAGAAAGGTCAAAAACTCTAGAAAAATCAGTGCATTTGACCCTCTTGCAAAAGAGTGTAGGGAAAGGGCAAGAGAAAGGGCAAGAGAGAGAACAAGAGAAAAGATGAGAAATCGTGGAGTGCTAGCTGAAGAATCAAAGCAATGTGGAGAGGAAACAAATCAGGATCTGATCCAATTGGGTTCTTGGAACCCCTTTGAAACAGGAGATCAAGAATCTGCAGGTGCCAAGAGAACTACTACTCACAGTGTTGCTGAGAATCCTTCTTCCTTGGACGTGATTACTATTGAGGCTAAAGAACAAAGCTACCACGCAGCAAAGGAGCATGATGATGATGATGACGATTCTTTGGTTGTTTTGAGCAAATGGAGCCCCTCCTTGATTTTCAATAACTATGGATTCTCTCAAGATCACCAATTTGCAGAATTTCAGTCCTTGGGAAAGCTGTGGGAGGCCTAA 1194 0.4204 MQSQSSDTFPSHNRNDPISYYDPAFYYYNSRPFFIDSESNPTSKQENNNNNCDLVPSPPPPLSFFHFPSPTFEDTQNQIFLEQRHDFLLQFYHQPLPQDPEPQPVITTMDLSVKKSDQIQRKRVPGKRDRHSKINTARGLRDRRMRLSLEVAKRFFGLQDMLNFDKASKTVEWLLNQAKVEINRLVKEKQKQQQQQKKKKENDHHYYQSCSSASSECDQEGVSCLDEVVVGGDQEQQQERVEKVVKRKVKNSRKISAFDPLAKECRERARERARERTREKMRNRGVLAEESKQCGEETNQDLIQLGSWNPFETGDQESAGAKRTTTHSVAENPSSLDVITIEAKEQSYHAAKEHDDDDDDSLVVLSKWSPSLIFNNYGFSQDHQFAEFQSLGKLWEA* 398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g1787 397 MobiDBLite consensus disorder prediction 269 333 - -
Gso6g1787 397 ProSiteProfiles TCP domain profile. 127 185 IPR017887 -
Gso6g1787 397 Pfam TCP family transcription factor 126 283 IPR017887 -
Gso6g1787 397 Coils Coil 175 203 - -
Gso6g1787 397 ProSiteProfiles R domain profile. 263 280 IPR017888 -
Gso6g1787 397 MobiDBLite consensus disorder prediction 269 296 - -
Gso6g1787 397 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 25 368 IPR005333 GO:0003700
Gso6g1787 397 MobiDBLite consensus disorder prediction 37 53 - -
Gso6g1787 397 MobiDBLite consensus disorder prediction 297 333 - -
Gso6g1787 397 MobiDBLite consensus disorder prediction 37 59 - -
Gso6g1787 397 PANTHER TRANSCRIPTION FACTOR TCP18 25 368 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g1787 Gso-Chr6 20812311 20814744 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g1787 98 277 TCP Transcription Factor Family AT3G18550 38.624 3.77e-30 118
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Gso6g1787 TCP 2.9e-44 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g1787 - - gsj:114416678 712.99
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso6g1787 6 20812311 20814744 Gso6g1787 6 20812311 20814744 ECH
Gso4g1277 4 33197936 33200101 Gso6g1787 6 20812311 20814744 GST