Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Gso6g1778 | ATGGCCGAAGCAGAACACAACGATCCCACCTCGCCGGAGCGCGAGGACCAAACCAAAAGCAACAAAAAGAAGCTCCGAAAGAGAAAAAGACCTCAAAAGACCGAGCAGAAACAAGAGGAGGAGAAGAACGATGCGAACATTGATAGCGCCCAAACACAAACTGAAGATGAAGGAGAGAATCAAGAAGACACAAATGTGAACAACAACGTCTCATCTGGAATCATGAGCACCGAGTCTTTCTCCTCTCTGGGCTTGTCCGAACCCACTTCCAAAGCCATTGCAGACATGAGCTTCCACCGTATGACTCAGATTCAAGCGAAGGCAATTCCGACGCTTCTGACCGGGAATGACGTGCTTGGTGCGGCGAGAACGGGTGCTGGGAAAACCCTAGCGTTTTTGGTTCCGGCGGTGGAGTTGTTGTACAACGTTCAGTTTACGCCGCGGAACGGGACGGGTGTTGTTGTCATATGCCCGACGAGGGAGCTGGCGATTCAGACGCACGCCGTGGCGAAGGAGCTGCTGAAGTATCACTCGCTGACGCTTGGGTTGGTGATTGGGGGTTCCGGGAGGAAGGGAGAGGCGGAGCGCATTATGAAAGGGGTGAACCTGTTGGTGGCGACGCCGGGAAGGCTTCTCGATCACCTCCAGAATACGAACGGGTTTGTATATAAAAACTTGAAGTGCCTCATGATTGATGAAGCTGACAGGATATTGGAAGCAAACTTTGAGGAGGAGATGAAGCAGATTATTAACATACTTCCAAAGAAAAGGCAAACAGCTTTGTTCTCAGCTACACAAACAAAGAAGGTTAAGGATCTTGCTCGCTTATCATTTCAGACAACTCCTATCTATATTGATGTAGATGATGGGAGAAAAAAGGTCACAAATGAAGGATTGCAGCAGGGCTATGTTGTTGTTCCCTGTGCTAAACGTTTTGTTGTTCTCTATTCATTCTTGAGGAGATACCAATCAAAAAAAGTGATGGTCTTTTTCTCTTCATGCAACTCTGTCAAATTCCATGCAGATCTTCTCCAGTGCACTGGGTTGGACTGCTTAAATATTCATGGAAAACAAAAGCAACATGCCCGCACTACTACGTTCTTCAACTTTTGCAAAGCAGAAAAGGGGATCTTGCTCTGTACTGATGTTGCTGCTCGGGGACTTGACATACCGGATGTGGACTGGATTGTGCAGTTTGATCCACCTGATGAACCAAAGGAATATATCCATAGGGTTGGTAGAACAGCTCGTGGGGAAGGTGGAAAAGGAAATGCTTTACTTTTCCTGATTCCTGAAGAATTGCAATTTCTTCACTATTTGAAGGCCGCAAAGGTTCCTGTGAAAGAATATGCATTTGATCATAAGAAGCTTGCAAATGTACAATCTCAACTGGAGAAGTTGGTGGCTGGCATTTATCATTTGAATGTTATGGCTAAAGATGCATATAGGTCATATATATTAGCATATAATTCACACTCCATGAAAGATATATTCAATGTTCACCGCCTTGATTTACAGGCTGTTGCTGCTTCATTCTGTTTCTCAAACCCACCGAAGGTGAATCTGAACATAGACAGCAGTGCTTCAAAGCATAGGAAGAAAATACGCAAAGTAGAAGGAAAAATTAATAAAGGCAATTTGTGA | 1644 | 0.4507 | MAEAEHNDPTSPEREDQTKSNKKKLRKRKRPQKTEQKQEEEKNDANIDSAQTQTEDEGENQEDTNVNNNVSSGIMSTESFSSLGLSEPTSKAIADMSFHRMTQIQAKAIPTLLTGNDVLGAARTGAGKTLAFLVPAVELLYNVQFTPRNGTGVVVICPTRELAIQTHAVAKELLKYHSLTLGLVIGGSGRKGEAERIMKGVNLLVATPGRLLDHLQNTNGFVYKNLKCLMIDEADRILEANFEEEMKQIINILPKKRQTALFSATQTKKVKDLARLSFQTTPIYIDVDDGRKKVTNEGLQQGYVVVPCAKRFVVLYSFLRRYQSKKVMVFFSSCNSVKFHADLLQCTGLDCLNIHGKQKQHARTTTFFNFCKAEKGILLCTDVAARGLDIPDVDWIVQFDPPDEPKEYIHRVGRTARGEGGKGNALLFLIPEELQFLHYLKAAKVPVKEYAFDHKKLANVQSQLEKLVAGIYHLNVMAKDAYRSYILAYNSHSMKDIFNVHRLDLQAVAASFCFSNPPKVNLNIDSSASKHRKKIRKVEGKINKGNL* | 548 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Gso6g1778 | 547 | MobiDBLite | consensus disorder prediction | 1 | 72 | - | - | |
| Gso6g1778 | 547 | MobiDBLite | consensus disorder prediction | 1 | 20 | - | - | |
| Gso6g1778 | 547 | ProSiteProfiles | DEAD-box RNA helicase Q motif profile. | 78 | 106 | IPR014014 | GO:0003724 | |
| Gso6g1778 | 547 | CDD | SF2_C_DEAD | 299 | 429 | - | - | |
| Gso6g1778 | 547 | SMART | DUF4217_3 | 459 | 522 | IPR025313 | - | |
| Gso6g1778 | 547 | ProSiteProfiles | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 109 | 284 | IPR014001 | - | |
| Gso6g1778 | 547 | ProSitePatterns | DEAD-box subfamily ATP-dependent helicases signature. | 230 | 238 | IPR000629 | - | |
| Gso6g1778 | 547 | MobiDBLite | consensus disorder prediction | 32 | 46 | - | - | |
| Gso6g1778 | 547 | Gene3D | - | 16 | 288 | IPR027417 | - | |
| Gso6g1778 | 547 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 150 | 440 | IPR027417 | - | |
| Gso6g1778 | 547 | Pfam | Domain of unknown function (DUF4217) | 460 | 520 | IPR025313 | - | |
| Gso6g1778 | 547 | SMART | helicmild6 | 338 | 419 | IPR001650 | - | |
| Gso6g1778 | 547 | ProSiteProfiles | Superfamilies 1 and 2 helicase C-terminal domain profile. | 314 | 468 | IPR001650 | - | |
| Gso6g1778 | 547 | PANTHER | RNA HELICASE | 27 | 525 | - | - | |
| Gso6g1778 | 547 | PANTHER | DEAD-BOX ATP-DEPENDENT RNA HELICASE 51 | 27 | 525 | - | - | |
| Gso6g1778 | 547 | CDD | DEADc_DDX18 | 89 | 286 | IPR044773 | GO:0003724|GO:0005524 | |
| Gso6g1778 | 547 | Gene3D | - | 295 | 542 | IPR027417 | - | |
| Gso6g1778 | 547 | SMART | ultradead3 | 97 | 302 | IPR014001 | - | |
| Gso6g1778 | 547 | Pfam | DEAD/DEAH box helicase | 102 | 273 | IPR011545 | GO:0003676|GO:0005524 | |
| Gso6g1778 | 547 | Pfam | Helicase conserved C-terminal domain | 314 | 418 | IPR001650 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Gso6g1778 | Gso-Chr6 | 20566584 | 20573882 | Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Gso6g1778 | 78 | 437 | Eukaryotic Initiation Factors Gene Family | AT3G13920 | 30.495 | 9.01e-45 | 161 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Gso6g1778 | K13179 | - | gmx:100793807 | 1052.35 |
Event-related genes