Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g1743 ATGGGGAGAGGAAGGGTGCAGTTGAAGAGGATCGAGAACAAGATCAATAGGCAAGTGACGTTTTCAAAGAGAAGGTCTGGTTTGCTCAAGAAAGCACATGAGATCTCTGTGCTTTGTGATGCTGAAGTGGCCCTCATAGTCTTCTCCACCAAAGGCAAACTCTTTGAGTACTCCAGCGATCCATGTATGGAAAGAATTCTTGAACGGTATGAGAGGTATTCATATGCAGAGAGGCAGCTTGTTGCAAGTGATCAACCACAAACTGAAAATTGGACTCTAGAACATGCAAAGCTCAAAGCAAGGTTGGAAGTCCTACAGAAAAATCAAAGGAATTTTATGGGACAAGATTTGGAGGGCCTAAGTATCAAAGAGCTTCAAAATTTGGAACATCAACTTGATAGTGCTCTAAAACACATTAGATCACGGAAGAACCAAATCATGCATGAATCTATTTCAGAGCTTCATAAAAAGGATAAGGTCCTACAGGAACAAAATAACACTCTCGCAAAGAAGATAAAGGAGAAAGAGAAGGCACTAGCCCAGCATGCACAAATGGAGCAGCGTGGTGATGAAATGGATCTTACTTCCTCTGCCCTAGTACCTCATCCATTGGAGACATCAAACATTAGAGAGTCCTCACAAATAAGGGGTGAAGGAGATAATGAAGGAACCCCAACTCCAACCCGAGCAAATGCCATTCTTCCATCTTGGATGCTTCGTCCTTCAAATGAATAG 735 0.4245 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSTKGKLFEYSSDPCMERILERYERYSYAERQLVASDQPQTENWTLEHAKLKARLEVLQKNQRNFMGQDLEGLSIKELQNLEHQLDSALKHIRSRKNQIMHESISELHKKDKVLQEQNNTLAKKIKEKEKALAQHAQMEQRGDEMDLTSSALVPHPLETSNIRESSQIRGEGDNEGTPTPTRANAILPSWMLRPSNE* 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g1743 244 Coils Coil 161 188 - -
Gso6g1743 244 SUPERFAMILY SRF-like 2 93 IPR036879 GO:0003677|GO:0046983
Gso6g1743 244 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Gso6g1743 244 MobiDBLite consensus disorder prediction 201 244 - -
Gso6g1743 244 CDD MADS_MEF2_like 2 79 IPR033896 GO:0000977|GO:0045944
Gso6g1743 244 Coils Coil 88 108 - -
Gso6g1743 244 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Gso6g1743 244 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Gso6g1743 244 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Gso6g1743 244 MobiDBLite consensus disorder prediction 201 231 - -
Gso6g1743 244 ProSiteProfiles K-box domain profile. 88 178 IPR002487 GO:0003700|GO:0005634|GO:0006355
Gso6g1743 244 Pfam K-box region 83 172 IPR002487 GO:0003700|GO:0005634|GO:0006355
Gso6g1743 244 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Gso6g1743 244 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL8 HOMOLOG 1 221 - -
Gso6g1743 244 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 221 - -
Gso6g1743 244 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Gso6g1743 244 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Gso6g1743 244 Gene3D - 13 86 IPR036879 GO:0003677|GO:0046983
Gso6g1743 244 Coils Coil 125 145 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g1743 Gso-Chr6 19507004 19514111 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g1743 1 203 MADS-box Gene Family AT1G26310 63.768 7.19e-89 261
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Gso6g1743 K-box 3.5e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g1743 K09264 - gmx:100816836 471.855
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso6g1743 6 19507004 19514111 Gso6g1743 6 19507004 19514111 ECH