Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g1740 ATGGTTCCAACATTTTCCAAGGGAGCCCCCATTTTGTCTTTGTTGGAGTCGTCCACGCCGCCGAAGAGGGTGAGAGCTTTGGGGGCACATTCTCAGACTGCTTACTGCCAAGTCTATGGCTGTAACAAGGATCTGAGTGGCTGCAAAGACTACCACAAGGGGCACAAAGTTTGTGAGGTTCACTCCAAGACTTACAAAGTTATAGTGAATGGCATTGAACAAAGGTTTTGCCAGCAATGTAGTAGGTGTAGGTTTCATTTGCTGGCTGAATTTGATGATGGTAAGCGTAGCTGTCGTAAATGCCTTGCAGGCCACAATGAGCGTCGAAGAAAACCACAAGTGGGTATTCACTCTGGAAAAGCTGGGAGGTTGCTTCAGCTATATCCTGATAGCAGATTCCAGGAGACCATGCTAACATCATCTTTTATCTGCCAAGAGATACTCCCCAGTGGAGTCTTGTCTTATGAGAAATACGAAGCGAGTGACTGGAGACCTATCAAAGCCTGTGAAAAACAAGTTCCATTGCTTCACAAAAATGGTGCTACGTCTGCCACAGGAAACGTCTTCTCTGAAAACAATAATCAATATCATCCACCTTCCCTTGGTGGCCAAAGTTCCGGGTCACAATCACTATTCCAGGACACCTCCTTAGGAAGCGAGGACTTCAATGTTTTCAACACAGAATCAGCGAGCCAATCATCAGGGATTCCCATGGCTCGCCCGATGGTTATTCCAAGCAGCCATAGCCATTACAGCATGAATCAGGTTTCTGAAAAGATGATGGGAATAAGTTCTCAGGCTTCAAATAGAGTGTTTGATAGGTTTCCACCTGAATTCAATCCTGTAGATGGACGTCATCTTAGACCCATATTGATATCAGACAATAATGAAATTTTCAATTTTGAAATGGCAGATGGGATCTTCCAAGGGTCGGATTTTGTGAATGTGAAAGATCGTCTTTCCTGTGAAGACGGCCTCACCTTTGACTCGCTTCAACTATCATCTCAACTGCAGCGCGTCGAGCAACAGAGGCAGTTCTTGCAGGTGAAACAAGAAAATGACTCTTCCTGCTCTCTGCGGATTACTTAA 1089 0.4509 MVPTFSKGAPILSLLESSTPPKRVRALGAHSQTAYCQVYGCNKDLSGCKDYHKGHKVCEVHSKTYKVIVNGIEQRFCQQCSRCRFHLLAEFDDGKRSCRKCLAGHNERRRKPQVGIHSGKAGRLLQLYPDSRFQETMLTSSFICQEILPSGVLSYEKYEASDWRPIKACEKQVPLLHKNGATSATGNVFSENNNQYHPPSLGGQSSGSQSLFQDTSLGSEDFNVFNTESASQSSGIPMARPMVIPSSHSHYSMNQVSEKMMGISSQASNRVFDRFPPEFNPVDGRHLRPILISDNNEIFNFEMADGIFQGSDFVNVKDRLSCEDGLTFDSLQLSSQLQRVEQQRQFLQVKQENDSSCSLRIT* 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g1740 362 Gene3D - 27 99 IPR036893 GO:0003677|GO:0005634
Gso6g1740 362 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 169 230 IPR044817 GO:0003677
Gso6g1740 362 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 228 362 IPR044817 GO:0003677
Gso6g1740 362 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 3 167 IPR044817 GO:0003677
Gso6g1740 362 SUPERFAMILY SBT domain 34 116 IPR036893 GO:0003677|GO:0005634
Gso6g1740 362 PANTHER 1 PROTEIN, PUTATIVE-RELATED 3 167 - -
Gso6g1740 362 PANTHER 1 PROTEIN, PUTATIVE-RELATED 169 230 - -
Gso6g1740 362 PANTHER 1 PROTEIN, PUTATIVE-RELATED 228 362 - -
Gso6g1740 362 MobiDBLite consensus disorder prediction 184 210 - -
Gso6g1740 362 ProSiteProfiles Zinc finger SBP-type profile. 33 112 IPR004333 GO:0003677
Gso6g1740 362 Pfam SBP domain 36 111 IPR004333 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g1740 Gso-Chr6 19398928 19403624 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g1740 20 164 SBP-box Gene Family AT1G69170 56.552 1.28e-44 156
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Gso6g1740 SBP 1.5e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g1740 - - gsj:114415941 728.783
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso6g1740 6 19398928 19403624 Gso6g1740 6 19398928 19403624 ECH