Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g1728 ATGATGTTGACGATGATGGCAAGTTCAAGAGAAGGTTATCAAGCAAAGCAAGAGGGTGACACAACCACTAATATTGACAAGTTCTCCAAGGCATCTTCTACTACTTCAAGACAATGGTCAGCGTTCAGAAATCCAAGAATTGTGAGAGTGTCTCGTTCTTTTGGAGGGAAAGATAGGCATAGCAAGGTTTGCACCATAAGAGGGTTGAGGGACAGAAGGATTAGGCTCTCGGTTCCCACAGCTATTCAGCTATATGATCTTCAAGACAAGCTTGGACTAAGCCAACCAAGCAAAGTGATAGATTGGTTGCTTGAAGCCACTAAATTTGACATTGACAAGCTCCCTCCACTCCAATTCCCTCAGGGTTTTGGTCAATTTCATCATCATCCACAAACCCTATTCCCTTTTCATGAATCAAGTGCTGCCTCTCATCAGCTGTCTCTTGGACCCTTCAGTGATGCTAGCTCCACTTTTGTGAGGGATGGAGGGATTCAAAACCTCATGGCAAAGTCAAGGTATTGGGAGAACATAAACTCAATGTCAAGATTAAGAGGCAATAAGGAAGCTGAAAAGGGCAAGTGGATCAAAACAAGTGAAGAAGAGAATCATGATCAAGATGGTGTTGTTGGAGGTTACAACAACTTGCAAGTTTCTACTCAAAGGCTTTTCCCAATGGGTAGTAGTAGTACTACTACTACTCACTCCCTTTTACCTGGTTTGTTAAACAATTCCATGCCATATAACGCCTACAGTTCTGAGCCTTCTAGTTTATCTTTATCCCAATTTGGAAGCCATGGATTGTTCCCTTCTCAACAAGTAGATCCTAATCCAAGCAGTGGCAACAATGGTGTGCAATTCCAATCTTCTTTGTCATTACCTTCATCGGGCTCTCAATTATTGTTTGGCTCATCTTCTGCTACACCATCAATGTTCACCACCTATGCTCCATTTATTGCACCCTCAGTGGACCCTGATCCAAGACAGTTCAACCACATTCATCAGTTCTTGAACTCAGGCTCTCAAATCTTGCCTCCTCATCCTCTCATACCATCTCTTCATCACCCATTCAATTCACAGATCAGACCCTTCCCAGCAGCACTCTTTAGTTCAAAGCTTTTGGATTCAGACAGCAGCAACCATAGCCAACAAGATCATAAGGGTAGCACTTCTTGA 1173 0.4297 MMLTMMASSREGYQAKQEGDTTTNIDKFSKASSTTSRQWSAFRNPRIVRVSRSFGGKDRHSKVCTIRGLRDRRIRLSVPTAIQLYDLQDKLGLSQPSKVIDWLLEATKFDIDKLPPLQFPQGFGQFHHHPQTLFPFHESSAASHQLSLGPFSDASSTFVRDGGIQNLMAKSRYWENINSMSRLRGNKEAEKGKWIKTSEEENHDQDGVVGGYNNLQVSTQRLFPMGSSSTTTTHSLLPGLLNNSMPYNAYSSEPSSLSLSQFGSHGLFPSQQVDPNPSSGNNGVQFQSSLSLPSSGSQLLFGSSSATPSMFTTYAPFIAPSVDPDPRQFNHIHQFLNSGSQILPPHPLIPSLHHPFNSQIRPFPAALFSSKLLDSDSSNHSQQDHKGSTS* 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g1728 390 MobiDBLite consensus disorder prediction 266 290 - -
Gso6g1728 390 MobiDBLite consensus disorder prediction 1 30 - -
Gso6g1728 390 ProSiteProfiles TCP domain profile. 56 114 IPR017887 -
Gso6g1728 390 PANTHER TRANSCRIPTION FACTOR TCP17 5 386 - -
Gso6g1728 390 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 5 386 IPR005333 GO:0003700
Gso6g1728 390 Pfam TCP family transcription factor 56 166 IPR017887 -
Gso6g1728 390 MobiDBLite consensus disorder prediction 10 30 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g1728 Gso-Chr6 19141946 19144694 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g1728 10 321 TCP Transcription Factor Family AT5G60970 41.486 1.65e-57 190
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Gso6g1728 TCP 4.8e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g1728 - - gmx:100804574 738.413