Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g1722 ATGTTAGATAGTTCATTAATATTTCCTTTAGGGTTGCGTGGAGAATTTGGGGTTGCAGGAATGGCTTTCTTTGGTAGAGTCGGGAATATACTGAGACAAGCAACGAATCAGAAGATCGGTTTGGAGATACGTTCTTTGTCATCTGTTTTCCAGGCTACACGGTGGATGTCAAATGCTCCAAATTCAAGGCTGTTTATAGGAGGTGTTTCGTATTCTATTGACGCGCAAAGTTTGGGGGAAATTTGTTCACAATATGGCCAAGTTGTTGATGCAAGGATAATTATGGATCGTGAAACTGGTAGGCACAGAGGATTTGGTTTTATCACTTACAGTAATGTTGATGAGGCATCGCGTGCCCTTCAAGCCTTGGATGGACAGGATCTTGACGGTCGTCGGGTTGAGGTAAAATTTGCAATTGAAAGATCCCATGGATTTGGTGGCGGCGGCTTTGGTGGATCTTATGGCAATACTCCCTATGATGCTGGAGCTGGCACTGGGCATCCAGGTAGTTATGGCAACACTCCATATGGTGCTGCAAGTGGTGGGTATGACAATACTGGTGGTGGCAATGCTGCTGGAGTTTATGGCAGGGGTGAAGATGGTGGAGGTGGCAATTGGCCGAGTGGTAATTTTGGGGGAAGCAGCTTTGGTAATAACTATGGCGATGCTGGTGTCTATGCTGGCAATTCTGCTGGAGGTTATGACAACAATGGATATGGTGGAGGATCTGGCGGTGACGCTGGTCCCTATGGTAGCAATGCTGCTAGAGATTATGACAACGGCGTTGGAGGATCAGGTAGCAGTTTTGGGGACAGAAGCTCTGGCAAGAACTATGGTGATGCCGGTGCCTTCAGAGCCAATGCTGCCAGTGAATATGGTGGAGGATCAGATGGCAGTTTTGGGGACAGCAGCTCTGTCAACAACTATGGTGCTGGTGGTGGTTATAATGGAAGCGGAACGAGTTACAGGAATGCTGGTAGCTTTGCAACCAGTAACCCTTACAACGATGGACCAGGTGCTGCCGGATTTGGCAAGAATAATAATTATGACAGTTCTGCAGGATTTGGTAGTGGCAGTAGGTATGGTAGTGCTGCTGCTGCTGGAGGAAGGCAGAGTTTTGCCGGTAGTCAGCACCCTGGAAGTGCCATGGCGAATGCCAGTGACGGTACAGATACTGGAAATGGCTTTGCTGGTGGAAGTTATGGGAATGCTGGTAGCTTTGCAACCAGTAAAACATACAATGATGGAACAGGTGCTGCTGGATTTGGCAAGAATAATAAGTATGACAGTTCTTCAGGATTTGGTAGCAGCAGTAGGTATGATAGTGCTGCCTCTGTTGGCAGCCATGGCAGCCAGAGTTTTGCCGGTAAACAGCACCCTGGAATGGTGAATGCCAGTGATGGTACAGGTACTGGAAATGGCTTTGCTGGTGGAAGTTATGGGAATGCTGGTAGCTATGCAACCAGTAACACTGACAACGATGGAACAGGTGCTGCTGGATTTGGCAAGAATAATAATTATGACACTTCTGCTGGATTTGGTAGTGGCAGTAGGTATGGTAGTGCTGCTGCTGGTGGAAGGCAGAGTTTTGCCGGTAGTCAGCACCCTGGAAGTGCCATGGCGAATGCCAGTGATGGTACAGATACTGGAAATGGCTTTGCTGGTGGAAGTTATGGGAATGCTGGTAGCTTTGCAACATGTAACAGTTACAACGATGGAACAGGTACTGCTGGATTTGGCAAGAGTAATAAGTATGACAGTTCTGCAGGATTTGGTAGCAGCAGTAGGTATGGTAGTGCTGCTGCTGTTGGCAGCCAGAGTTTTGCCAGTAGTCAGCACCCTGGAAGTGCCATGGCGAATGCCAGTAATGGTACAGGTACCGGAAATGACTTTGCTGATAGATATCATGGCAGCGGTGGCCAATTCGGTAGCAATCAAAGCAGCAATGTGGGTCAACATGGTCGAGATTTTGGAGGCTCGTTCGACGAAGATTTCAGGATCGGCAATTATGAAAATGATGCCTTTGCTGGACGGGCATGA 2040 0.4794 MLDSSLIFPLGLRGEFGVAGMAFFGRVGNILRQATNQKIGLEIRSLSSVFQATRWMSNAPNSRLFIGGVSYSIDAQSLGEICSQYGQVVDARIIMDRETGRHRGFGFITYSNVDEASRALQALDGQDLDGRRVEVKFAIERSHGFGGGGFGGSYGNTPYDAGAGTGHPGSYGNTPYGAASGGYDNTGGGNAAGVYGRGEDGGGGNWPSGNFGGSSFGNNYGDAGVYAGNSAGGYDNNGYGGGSGGDAGPYGSNAARDYDNGVGGSGSSFGDRSSGKNYGDAGAFRANAASEYGGGSDGSFGDSSSVNNYGAGGGYNGSGTSYRNAGSFATSNPYNDGPGAAGFGKNNNYDSSAGFGSGSRYGSAAAAGGRQSFAGSQHPGSAMANASDGTDTGNGFAGGSYGNAGSFATSKTYNDGTGAAGFGKNNKYDSSSGFGSSSRYDSAASVGSHGSQSFAGKQHPGMVNASDGTGTGNGFAGGSYGNAGSYATSNTDNDGTGAAGFGKNNNYDTSAGFGSGSRYGSAAAGGRQSFAGSQHPGSAMANASDGTDTGNGFAGGSYGNAGSFATCNSYNDGTGTAGFGKSNKYDSSAGFGSSSRYGSAAAVGSQSFASSQHPGSAMANASNGTGTGNDFADRYHGSGGQFGSNQSSNVGQHGRDFGGSFDEDFRIGNYENDAFAGRA* 680
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g1722 679 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 21 282 - -
Gso6g1722 679 SUPERFAMILY RNA-binding domain, RBD 58 169 IPR035979 GO:0003676
Gso6g1722 679 MobiDBLite consensus disorder prediction 608 629 - -
Gso6g1722 679 Gene3D - 33 156 IPR012677 -
Gso6g1722 679 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 64 133 IPR000504 GO:0003723
Gso6g1722 679 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 62 140 IPR000504 GO:0003723
Gso6g1722 679 PANTHER GLYCINE-RICH RNA-BINDING PROTEIN 3, MITOCHONDRIAL 21 282 - -
Gso6g1722 679 MobiDBLite consensus disorder prediction 639 654 - -
Gso6g1722 679 MobiDBLite consensus disorder prediction 608 665 - -
Gso6g1722 679 MobiDBLite consensus disorder prediction 524 545 - -
Gso6g1722 679 MobiDBLite consensus disorder prediction 527 545 - -
Gso6g1722 679 MobiDBLite consensus disorder prediction 439 469 - -
Gso6g1722 679 SMART rrm1_1 63 136 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g1722 Gso-Chr6 19007662 19012486 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g1722 60 143 Eukaryotic Initiation Factors Gene Family AT3G16380 39.080 5.27e-10 60.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g1722 K12741 - gmx:100801928 1094.72
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso6g1722 6 19007662 19012486 Gso6g1722 6 19007662 19012486 ECH