Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g1717 ATGGCGATGGCTGCAGCTCTGCGTCGCGAAGGAAGGCGTTTGACCCAACCAATCAACGCCCTCCACTCTTCTCTCAATTCCTCCCTCATCTCTCAAGACCAAGCCCCTCATGGCGCGCGCTCCATTTCCACTCAAGTTGTGAGGAACCGAATGAAGAGTGTGAGGAATATCCAGAAGATCACCAAGGCCATGAAGATGGTTGCCGCGTCCAAGCTGCGGGCCGTTCAGACCAGAACTGAAAATTCCCGCGGCCTCTGGCAACCGTTCACCGCTCTTCTCGGTGACGATCCCAGTGTTGACGTTAAGAAAAACGTTGTCGTTACCATCTCTTCGGACAAAGGTCTTTGTGGTGGAATCAATTCCACGTCTGTCAAGATAAGCAGGGTTTTGAACAAATTGAATTCTGGGCCTGATAAAGAGACAAAATATGTCATATTGGGAGAGAAGGCTAAGGCTCAATTGTTGCGTGACTCAAAGAAACAAATTGCGCTCAGCCTTACTGAATTGCAGAAAAATCCCCTGAACTACACTCAGGTGTCTGTCTTGGCAGATGACATTCTAAAGAATGTGGAGTATGACGCATTAAGGATTGTTTTCAACAAATTTCATTCTGTTGTACAATTTTTGCCAACAGTTGCAACTGTACTGTCTCCTGAGGTTATTGAGAGAGAGGCTGAATCAGGAGGAAAGCTTGGGGAATTGGATTCATATGAGATTGAAGGTGGCGAGACAAAAGCTGAAATTCTTCAGAATCTGGCTGAGTTCCAGTTTTCTTGTGTCATGTACAATGCTGTGTTGGAGAATGCTTGTAGTGAGCAAGGAGCAAGAATGTCTGCAATGGACAGCTCTAGCAGGAATGCTGGGGATATGCTTGATCGTCTCACCCTCACCTATAACAGAACTCGTCAAGCATCAATCACCACTGAATTGATAGAGATTATCTCTGGAGCTTCAGCACTGGAAGGTTAA 969 0.4634 MAMAAALRREGRRLTQPINALHSSLNSSLISQDQAPHGARSISTQVVRNRMKSVRNIQKITKAMKMVAASKLRAVQTRTENSRGLWQPFTALLGDDPSVDVKKNVVVTISSDKGLCGGINSTSVKISRVLNKLNSGPDKETKYVILGEKAKAQLLRDSKKQIALSLTELQKNPLNYTQVSVLADDILKNVEYDALRIVFNKFHSVVQFLPTVATVLSPEVIEREAESGGKLGELDSYEIEGGETKAEILQNLAEFQFSCVMYNAVLENACSEQGARMSAMDSSSRNAGDMLDRLTLTYNRTRQASITTELIEIISGASALEG* 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g1717 322 Pfam ATP synthase 45 320 IPR000131 GO:0015986|GO:0045261|GO:0046933
Gso6g1717 322 Gene3D ATP synthase, gamma subunit, helix hairpin domain 47 317 - -
Gso6g1717 322 PANTHER BNAA05G10580D PROTEIN 1 321 - -
Gso6g1717 322 ProSitePatterns ATP synthase gamma subunit signature. 306 319 IPR023632 -
Gso6g1717 322 SUPERFAMILY ATP synthase (F1-ATPase), gamma subunit 44 320 IPR035968 GO:0015986|GO:0045261|GO:0046933
Gso6g1717 322 PRINTS ATP synthase gamma subunit signature 101 120 IPR000131 GO:0015986|GO:0045261|GO:0046933
Gso6g1717 322 PRINTS ATP synthase gamma subunit signature 193 210 IPR000131 GO:0015986|GO:0045261|GO:0046933
Gso6g1717 322 PRINTS ATP synthase gamma subunit signature 267 286 IPR000131 GO:0015986|GO:0045261|GO:0046933
Gso6g1717 322 PRINTS ATP synthase gamma subunit signature 298 319 IPR000131 GO:0015986|GO:0045261|GO:0046933
Gso6g1717 322 CDD F1-ATPase_gamma 43 317 IPR000131 GO:0015986|GO:0045261|GO:0046933
Gso6g1717 322 Gene3D - 67 279 - -
Gso6g1717 322 PANTHER ATP SYNTHASE GAMMA CHAIN 1 321 IPR000131 GO:0015986|GO:0045261|GO:0046933
Gso6g1717 322 TIGRFAM ATPsyn_F1gamma: ATP synthase F1, gamma subunit 43 320 IPR000131 GO:0015986|GO:0045261|GO:0046933
Gso6g1717 322 PIRSF ATP_synthase_gamma 10 320 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g1717 Gso-Chr6 18918179 18924111 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g1717 47 320 Primary Pumps ATPases AT1G15700 29.907 1.28e-25 103
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g1717 K02136 - gmx:100813657 613.994
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso6g1717 6 18918179 18924111 Gso6g1717 6 18918179 18924111 ECH