Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g1702 ATGGAAGAAGATCATCAAGAAGTGAAACACGTGTGCAAGTTCTGCTGCAAGAGCTTCCCTTGTGGAAGATCCTTGGGTGGCCACATGAGGTCACATGTCACCACCAATGTTTCAACCGAGGCAGATAAGCTTTCATCATTCAACAACAATGGAGGAGGAGATTCTGAAGGAGGAACTAACAATGGAGGAGGAGGGTATGGTCTGAGGGAGAATCCAAAGAAGACTTGGCGGTTCAATGATTCGAGTGAGGACAACAACAACAACAACACAACTTTGTTGGTGTTGGACAAGTTGTGCAAAGAGTGTGGCAAAGGGTTTCAATCTTGGAAAGCTCTGTTTGGTCACATGAAGTGCCACTCTGAGAAAGTGTACCAAAACAACAACAGCAGCAGCAGCTTGTTATTGGAGGATCAAGATTCGTGGAATGGTAATAACACCACCAATGCTAGCCAGAGCCAGAAGATGATGGTGTCGATGGATGATAGCCACTCTGAGAATGAGGCCACGGCTCCGAATCGAAGGAGAAGATCCAAGAGGAGAAGGACAAGGTACATGGCCCCTTCAACTTCTTCTGTGTCCCTTGTTTCTGAGGCTCATCATGAGCAGGTGCAGCAGGAAGAGGTTGCAATGAGTTTGCTGATGCTTAGTAGGGATGTGAGTCCTTGGTGTGGTCTCAATTCTGTTAATTCAATGCAGTTTGAATCTCCTTCTTTGGTTCCTACCTATTTGGATTCTAAGGTTGAGGGAAAAAGGGTTGTTATCTCCAATGGTTATGAGAAAAAGGTTACCAAACCAAGGGATATGATGAAGGGGGAGTTTGGAAATTTGGATTGTTCAAATCTCAACTCAAAAGGAAAAACGAGTTCAGAGCTTTTGGGTACTACTCAGAGTCCTGGAAGTGGATTTGGGGTCAGCAAGACCATGGTTTCTAATTCTGCATTTGAGGACAATGGAACAGATAATAATCATAATAGTAACAATAAGTACACTTCAATCAAGGCAAAGTTTATGGACTCTGAGTTGAAGTCAAGTCCTTTGAAGAGTTGGGTGAACAACAACAAGAACTCAGAAGGTGAATTCAGCAAAAGCTCCAATAAGAGAGGAAAGTTTGAGTGCACTACTTGTAAGAAAATCTTCCACTCATATCAAGCACTTGGAGGCCACAGGGCTAGTCACAAGAGGATCAAGGGTTGCTTTGCTTCAAGAAATGAGAGCAGTGAGAACAGCACTGAGTTGGAGGCAGAACTCTCCCCAGACCCTACAACAGAAAGTAAGCTCCTGAAGAATGAGTATGTGGAAGAACATGAAATGGTTACTAATGTTACTACTGCTACTACTACTACTCAATTTGACAATGAGGTTGAAACAGTGAGAGATTCCAAGAAGGGGAAAGGGCACGAGTGTCCAATTTGCCACAAGGTTTTTCCATCTGGCCAAGCCTTGGGTGGCCACAAGAGATCTCATCACTTGGCTGGTGGGTCTGAGAGTGCAAGAAATTTTCAAAGTCAAACAATTGTACTTGAGGAAGCAGCACCAGAAATTAGGGACTTTTTTGACCTTAACCTTCCTGCTTCTACAGAGGAAGAAGGTACTAGCCATGGCCATGCTGAGCATTACAGACCTTGGTGGGTAGTAGGAGGAAATCACAAGCAGGAAGCACTGGTTGGCCTCATTTCTAACTAA 1683 0.4415 MEEDHQEVKHVCKFCCKSFPCGRSLGGHMRSHVTTNVSTEADKLSSFNNNGGGDSEGGTNNGGGGYGLRENPKKTWRFNDSSEDNNNNNTTLLVLDKLCKECGKGFQSWKALFGHMKCHSEKVYQNNNSSSSLLLEDQDSWNGNNTTNASQSQKMMVSMDDSHSENEATAPNRRRRSKRRRTRYMAPSTSSVSLVSEAHHEQVQQEEVAMSLLMLSRDVSPWCGLNSVNSMQFESPSLVPTYLDSKVEGKRVVISNGYEKKVTKPRDMMKGEFGNLDCSNLNSKGKTSSELLGTTQSPGSGFGVSKTMVSNSAFEDNGTDNNHNSNNKYTSIKAKFMDSELKSSPLKSWVNNNKNSEGEFSKSSNKRGKFECTTCKKIFHSYQALGGHRASHKRIKGCFASRNESSENSTELEAELSPDPTTESKLLKNEYVEEHEMVTNVTTATTTTQFDNEVETVRDSKKGKGHECPICHKVFPSGQALGGHKRSHHLAGGSESARNFQSQTIVLEEAAPEIRDFFDLNLPASTEEEGTSHGHAEHYRPWWVVGGNHKQEALVGLISN* 561
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g1702 560 MobiDBLite consensus disorder prediction 135 197 - -
Gso6g1702 560 MobiDBLite consensus disorder prediction 135 165 - -
Gso6g1702 560 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 1 560 - -
Gso6g1702 560 ProSiteProfiles Zinc finger C2H2 type domain profile. 370 397 IPR013087 -
Gso6g1702 560 MobiDBLite consensus disorder prediction 287 306 - -
Gso6g1702 560 PANTHER C2H2-TYPE ZINC FINGER PROTEIN 1 560 - -
Gso6g1702 560 Gene3D Classic Zinc Finger 367 488 - -
Gso6g1702 560 MobiDBLite consensus disorder prediction 402 421 - -
Gso6g1702 560 MobiDBLite consensus disorder prediction 43 71 - -
Gso6g1702 560 ProSiteProfiles Zinc finger C2H2 type domain profile. 10 37 IPR013087 -
Gso6g1702 560 ProSitePatterns Zinc finger C2H2 type domain signature. 99 119 IPR013087 -
Gso6g1702 560 MobiDBLite consensus disorder prediction 346 366 - -
Gso6g1702 560 SUPERFAMILY beta-beta-alpha zinc fingers 370 488 IPR036236 -
Gso6g1702 560 MobiDBLite consensus disorder prediction 402 417 - -
Gso6g1702 560 ProSiteProfiles Zinc finger C2H2 type domain profile. 466 488 IPR013087 -
Gso6g1702 560 ProSitePatterns Zinc finger C2H2 type domain signature. 12 32 IPR013087 -
Gso6g1702 560 ProSiteProfiles Zinc finger C2H2 type domain profile. 97 124 IPR013087 -
Gso6g1702 560 MobiDBLite consensus disorder prediction 43 57 - -
Gso6g1702 560 SMART c2h2final6 466 488 IPR013087 -
Gso6g1702 560 SMART c2h2final6 370 392 IPR013087 -
Gso6g1702 560 SMART c2h2final6 10 32 IPR013087 -
Gso6g1702 560 SMART c2h2final6 97 119 IPR013087 -
Gso6g1702 560 Pfam C2H2-type zinc finger 370 394 - -
Gso6g1702 560 Pfam C2H2-type zinc finger 99 121 - -
Gso6g1702 560 Pfam C2H2-type zinc finger 466 489 - -
Gso6g1702 560 Pfam C2H2-type zinc finger 10 32 - -
Gso6g1702 560 ProSitePatterns Zinc finger C2H2 type domain signature. 372 392 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g1702 Gso-Chr6 18413771 18416426 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g1702 3 228 C2H2 Transcription Factor Family AT1G26610 36.653 1.00e-31 126
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gso6g1702 zf-C2H2_6 1.7e-10 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g1702 - - gmx:102660800 1050.43