Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g1687 ATGGAACTCACCGAAGAACAACGACGCCAGGTAGAAGCAAACCGCGCCGCAGCGATCGCAAAACGCAAAGCATTCCTTGAATCTAGAGAAGAAGAAGAACAACAACAAAAGAATCCCGAAGGAGAAAACAACAGCAACACCAACCCGAACCCATGGAACCTTTTCAAGTGCCAAAAGTTCCCCCTTTCCCCCAAACCCCAACCCCCAAAATTCCTCGCCAGACTCGAAATATGCTCCCCCGATTCCTTCTCCATAACGCCCCTTCCTCTCTCTTCCTTCCCTTTCCCTGGTCACCAACATTGCCTCAACACTCTAAGCTCCACTCTCTCACAACAACATGTGGTGCCTTCGCATTACACGCAGACTAGTGAGGGCGAGAAGGTGTGCGTGTTCAAGCTGGCGGAGTACCGCGCCGTGCTGAAGCAGCTAAAGGCCGCGGCGGCGGCGGAGGTGCTGCTGGTGGAGGAGATCCCCTGGGCGACGTTCAACGTCGTGGAGTGCCTCTCGCGTTCCTTCGCGGCTGGGCGGTGGGCGCCCGTGCGGCCGGAGCACCTGCCCGACGACGAGGTGGACCGCCTGATCGGGAGGCTTCCGAGGACGCTCTTGGAAAGGTTGCTGCCTTTCCAGCATGATGGGCTGAGATTCGCGTTGAGAAGAGGTGCAAGGTGCCTCATTGCCGATGATATGGGCCTCGGGAAGACGCTACAGGCTATTGCTATTGCAGGGTGTTTTGTGGAGGAAGGGTCTATACTTGTGGTTTGTCCGGCTGTGTTGCGGTATTCTTGGGCGGAGGAATTGGAGCGCTGGCTTCCTTCCTGCTTGCCGGCTGATGTCCATCTCGTTTTTGGCCATCAAGACAACCCTATATATTTAAAAAGAAGTCCCAGAGTTGTGGTTATTTCTTATACCATGCTTCATCGTCTAAGGAAGAGCATGCTTGAACGTGAATGGGCTCTCCTGATTATTGATGAATCTCATCATGTGCGATGTACAAAGAAAACAGAACCAGGAGAGATACAGGCTGTTCTCGATGTGGCTTCGAAAGTCAAGCGTATAATTCTGCTATCAGGGACACCTTCTCTGTCAAGACCATACGACATATATCACCAGATAAATATGTTATGGCCTGGTTTGCTGGGGAAGACTAAATATGAGTTTGCAAAAACTTATTGCGATTTAAAATATATCAAAGGCATCCAAGGAAAATTTTTTGCGGATTATTCAAAGGGCGTGCGCTTGGAAGAGTTGAATGTGTTACTAAAGCAAACTGTTATGGTGATAAGGCGTCTGAAGGAACATGTGATGCTACAGTTACCTCCAAAACGCCGGCAAATTATAAGACTGTTGATAAAAAGATCAGATATAGTTGCTGCAAAAACTGTAGTTGGGGTATTCAATATTGATGCCTCTGAAAGGGAAAGTGAAGACGTGCCTTTAGAAACTTTGGATGAACCTGATGGAAAGCTTTCTTATCAGGAACTTGGAATTGCGAAGCTTTCTGGTTTTCGTGAATGGCTTGCTCTCCATCCAATCATTGCAGGATCAGAGAATGCTTCAAAAATGATAATTTTTGCTCATCACCACAAAGTTCTTGACGGAGTACAGGTGTTTTTATGTGAGAAAGGGATAAGTTTTGTGCGAATTGATGGAAATACTCTTGCCAGAGATAGACAATCAGCAGTAGTCTCATTTCGGTCATCACCAGAGGTTAAAATTGCAATAATAGGTATTCTAGCAGCAGGTTTTGGACTTGATTTCTCAACGGCACAAGATGTTGTGTTCTTGGAGCTACCAAAGTGCCCAACTATAATGCTCCAGGCTGAGGATAGAGCTCATCGTCGGGGACAAACAAATGCAGTTAATGTATACATATTCTGTGCAAAGGATACCTTGGATGAATCACATTGGAAAAATTTGAACAAAAGTTTGCAACGTGTTTCATGTACAACTGATGGCAAATATGATGCGATGAAAGAGATAGAGGTTGAAGGTATTTCTTATTTAGACTCATCTTTGAACAGTGATAATTGTGAAGAGCAATCTGCACGCAGAGATGCAGTAGGTGAAACACAATTGGATAAGCAACCTTCTGCAGAAAATTCAAATGAATCCGAAGCAAATCGAGATGATAAATCTGATGAGACTTTTCTTAATAACTCAATTCAGAGTTCTAATATTATGGCTGAAAATATTTCCTGCCAAGATTTAGGCAAGGCTTCAGTACTGGATGGAACTTGTGATGTTGATGTTTTTGATGGCATGGAGAGATGTCCTGAAAAGAGTTTTGAAGATGGAGATCAAGAAATACGGTTGCAGGATTTGAAAAAAATTTCAACAACAGAAGCAGATGACAACCAGTCTGTTAATCTGGTTGAAGTCAATGGACATTGTTCTAATCAAGTTGATTTTCTTCGATTTGAGGTGAGCCCATACACTGGAAGGATCCACTTGTATACTTGCATTTTGGGTACTGATAAAAGACCACAGCCACTTCATGAAAATTTTCGACCAGAGGAACTTGAGTTGTTAAGTTCTGTTGCTGATGATGAGAAACAGGCTCATGATGAGAAACAGAAAACAGAGTTTGTAACTGTGAAGGACAACCCCGCATATAGGCATGCTCTTATGGCTTTTGCAGAAGAGTGGAAGAACTTGAGGTCAATTGAACGCAGGAAGTTACTTGGAAAACCATTACAACTTCCTTTGGCTGTTGAATTATGCTACTTGAGTGAAAGCAATAACCACAACAACAAGGGATTATTAAATGGTGGAAGTAAAAGACGCAGGACGCCCTTAATGGAGATTAGCTATCCTTTACCATCAGATGCTGTTTGGAGAAAGGTATCTCTGCGAAGTGGCCTTGGTAAAAAGGAAAAAGAATACACTCAAGGCTGGAGTGTGACAGATGAGCCACTCTGTAAGCTTTGTCAAAAGCAGTGCCTGGCTAACAATGCCAAGACACCTGAATTTTTTGAAGATCTTTTTTGTAACCTTGTCTGCTATGAGGAGTATCGAATGAGAACTAGCAACAGATTCCTCCGTGAGGAACTTTTCAAAATTGAACATGGAGTGTGCACAAATTGCCAATTCGACTGTCATAAGCTCGTTGAGGATATAAGACCTTTGTCATTGGAAAGGCGGCGTGAGTACATAGAGAAAGTAGCACCGAAAGTTGCTAAACGGAAGAAAATGTTTGAGAAGCTTGTCAATGAACCAACTGAAGGCAATGCATGGCATGCTGACCATATTGTTCCAGTATATGACGGAGGAGGTGAGTGCAAGCTGGAGAATCTGAGGACTCTCTGTGTAGCCTGCCATTATGATATCACTGCTGCACAATGTGCTGAACGACGCATAGCCAAAGCAAATGCCAGGAAACAACTAAAAGCGTTAATGAATAGCATGAAAAATGGTATTAAGGGTGCTACTGGCACTAATACTAAGGACCATAAGCTTCTCGAGGAAGAAGGGAGTATGGTAGAAGATGAGCTTTTAGTTGAGGTTCCTGGCAGTGCCTATTCTTTAGCAGACAGCTAA 3537 0.4413 MELTEEQRRQVEANRAAAIAKRKAFLESREEEEQQQKNPEGENNSNTNPNPWNLFKCQKFPLSPKPQPPKFLARLEICSPDSFSITPLPLSSFPFPGHQHCLNTLSSTLSQQHVVPSHYTQTSEGEKVCVFKLAEYRAVLKQLKAAAAAEVLLVEEIPWATFNVVECLSRSFAAGRWAPVRPEHLPDDEVDRLIGRLPRTLLERLLPFQHDGLRFALRRGARCLIADDMGLGKTLQAIAIAGCFVEEGSILVVCPAVLRYSWAEELERWLPSCLPADVHLVFGHQDNPIYLKRSPRVVVISYTMLHRLRKSMLEREWALLIIDESHHVRCTKKTEPGEIQAVLDVASKVKRIILLSGTPSLSRPYDIYHQINMLWPGLLGKTKYEFAKTYCDLKYIKGIQGKFFADYSKGVRLEELNVLLKQTVMVIRRLKEHVMLQLPPKRRQIIRLLIKRSDIVAAKTVVGVFNIDASERESEDVPLETLDEPDGKLSYQELGIAKLSGFREWLALHPIIAGSENASKMIIFAHHHKVLDGVQVFLCEKGISFVRIDGNTLARDRQSAVVSFRSSPEVKIAIIGILAAGFGLDFSTAQDVVFLELPKCPTIMLQAEDRAHRRGQTNAVNVYIFCAKDTLDESHWKNLNKSLQRVSCTTDGKYDAMKEIEVEGISYLDSSLNSDNCEEQSARRDAVGETQLDKQPSAENSNESEANRDDKSDETFLNNSIQSSNIMAENISCQDLGKASVLDGTCDVDVFDGMERCPEKSFEDGDQEIRLQDLKKISTTEADDNQSVNLVEVNGHCSNQVDFLRFEVSPYTGRIHLYTCILGTDKRPQPLHENFRPEELELLSSVADDEKQAHDEKQKTEFVTVKDNPAYRHALMAFAEEWKNLRSIERRKLLGKPLQLPLAVELCYLSESNNHNNKGLLNGGSKRRRTPLMEISYPLPSDAVWRKVSLRSGLGKKEKEYTQGWSVTDEPLCKLCQKQCLANNAKTPEFFEDLFCNLVCYEEYRMRTSNRFLREELFKIEHGVCTNCQFDCHKLVEDIRPLSLERRREYIEKVAPKVAKRKKMFEKLVNEPTEGNAWHADHIVPVYDGGGECKLENLRTLCVACHYDITAAQCAERRIAKANARKQLKALMNSMKNGIKGATGTNTKDHKLLEEEGSMVEDELLVEVPGSAYSLADS* 1179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g1687 1178 Gene3D - 1001 1136 - -
Gso6g1687 1178 PANTHER DNA ANNEALING HELICASE AND ENDONUCLEASE ZRANB3 4 1133 - -
Gso6g1687 1178 CDD SF2_C_SNF 497 626 - -
Gso6g1687 1178 Pfam HNH endonuclease 1076 1107 IPR002711 GO:0003676|GO:0004519
Gso6g1687 1178 Coils Coil 1 21 - -
Gso6g1687 1178 Gene3D - 503 730 IPR027417 -
Gso6g1687 1178 SMART HNH_5 1059 1107 IPR003615 -
Gso6g1687 1178 MobiDBLite consensus disorder prediction 1 38 - -
Gso6g1687 1178 Gene3D - 187 424 IPR038718 -
Gso6g1687 1178 SMART helicmild6 532 615 IPR001650 -
Gso6g1687 1178 MobiDBLite consensus disorder prediction 1 50 - -
Gso6g1687 1178 Pfam SNF2-related domain 222 451 IPR000330 GO:0005524|GO:0140658
Gso6g1687 1178 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 193 410 IPR027417 -
Gso6g1687 1178 MobiDBLite consensus disorder prediction 678 715 - -
Gso6g1687 1178 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 507 661 IPR001650 -
Gso6g1687 1178 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 214 377 IPR014001 -
Gso6g1687 1178 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 315 668 IPR027417 -
Gso6g1687 1178 SMART ultradead3 201 396 IPR014001 -
Gso6g1687 1178 PANTHER DNA ANNEALING HELICASE AND ENDONUCLEASE ZRANB3 FAMILY MEMBER 4 1133 - -
Gso6g1687 1178 Pfam Helicase conserved C-terminal domain 512 615 IPR001650 -
Gso6g1687 1178 CDD HNHc 1070 1110 IPR003615 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g1687 Gso-Chr6 18175455 18192654 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g1687 520 633 RAD5 or RAD16-like Gene Family AT1G11100 39.474 1.29e-15 80.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Gso6g1687 SNF2_N 1.3e-24 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g1687 K25861 - gmx:100788690 2286.53